View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_55 (Length: 314)
Name: NF9357_low_55
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 43489605 - 43489900
Alignment:
| Q |
1 |
atgtttttgcctctgattcattgaaaattaatcatcaagaaggagaagagctatgatccgaagtagaccaaggtggcaactgagtagaaaaatacgagga |
100 |
Q |
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| T |
43489605 |
atgtttttgcctgtgattcattgaaaattaatcatcaagaaggagaagagctctgatccgaagtagaccaaggtggcaactgagtagaaaaatacgagga |
43489704 |
T |
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| Q |
101 |
aactgaagtattgccctgcatagaagaaacaaatgcagaagaagatgatgacaaagaagaagctggcgacgatgatgaagattgtagatgagaagccaca |
200 |
Q |
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| T |
43489705 |
aactgaagtattgccctgcatagaagaaacaaatgcagaagaagatgatgacaaagaagaagctggcgacgatgatgaagattgtagatgagaagccata |
43489804 |
T |
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| Q |
201 |
gaagaagccctaatcacattatcatcataaatattccttggagcaggaatacccgaaaactgaaaacgatcataaaagtttgtcgaatgctgagaa |
296 |
Q |
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||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43489805 |
gaagaagccctaatcacattatcatcataaacattccttgcaggaggaatacccgaaaactgaaaacgatcataaaagtttgtcgaatgctgagaa |
43489900 |
T |
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