View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9357_low_57 (Length: 309)

Name: NF9357_low_57
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9357_low_57
NF9357_low_57
[»] scaffold0691 (1 HSPs)
scaffold0691 (5-308)||(6317-6623)
[»] chr3 (16 HSPs)
chr3 (5-268)||(2748665-2748928)
chr3 (5-268)||(2797028-2797291)
chr3 (5-244)||(5412574-5412813)
chr3 (118-308)||(2807050-2807240)
chr3 (5-308)||(2768736-2769042)
chr3 (5-265)||(2856021-2856281)
chr3 (121-268)||(2790150-2790297)
chr3 (5-308)||(2758881-2759187)
chr3 (5-258)||(2818224-2818477)
chr3 (5-268)||(2838811-2839071)
chr3 (5-73)||(2755711-2755779)
chr3 (5-85)||(2790025-2790105)
chr3 (8-85)||(2806931-2807008)
chr3 (137-222)||(30989910-30989995)
chr3 (10-66)||(3200625-3200681)
chr3 (10-66)||(3357767-3357823)


Alignment Details
Target: scaffold0691 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 5 - 308
Target Start/End: Complemental strand, 6623 - 6317
Alignment:
Q  5 ataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgatgcatggagtcaaacatccaggat 104  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||| | | ||| | ||| ||||    
T  6623 ataagaacttgggtgaagcatatgagggaagcatcatttcgcattgaagatgttattgatgaataccttcggctgatccatagggccaaccctcctggat 6524  T
Q  105 gtggggcattagcctacaagattgcaagcccaattaaaactttgattccccgtcatcagatagcatctgagattcaggacattaaggtgtcacttcgtgg 204  Q
    | ||  |||||| || |||||||| ||||| ||| |||||||||||| | |  ||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  6523 gcggatcattagtctgcaagattgtaagcctaatcaaaactttgatttctcagcatcagatagcatctgagattcaggacataaagctgtcaattcgtgg 6424  T
Q  205 aattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatcatcaag---cagctatagtactagagagacagaaaaaggaagatgg 301  Q
    ||| ||||| |||||||| ||||||||||||||||||| ||||||||  |||||||||||   ||||   || ||  ||||| ||||||| |||||||||    
T  6423 aatcaaggacagaagtgaaaggtataactttcaaattttacatgaacctggatcatcaagtgtcagcagcagcacaggagaggcagaaaatggaagatgg 6324  T
Q  302 cgtgatc 308  Q
    |||||||    
T  6323 cgtgatc 6317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 2748665 - 2748928
Alignment:
Q  5 ataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgatgcatggagtcaaacatccaggat 104  Q
    ||||||||||||||||||||  |||| |||||||| ||||||||||||||||||||||||||||||||| |||| |||||| | | ||| | |||  |||    
T  2748665 ataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcatagggccaatcctcctagat 2748764  T
Q  105 gtggggcattagcctacaagattgcaagcccaattaaaactttgattccccgtcatcagatagcatctgagattcaggacattaaggtgtcacttcgtgg 204  Q
    | ||  | |||| |  |||||||||||| | ||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||  | ||| |||||||    
T  2748765 gcggatctttagtcggcaagattgcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtgg 2748864  T
Q  205 aattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatcatcaagcagc 268  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||| |||| | |||||||||    
T  2748865 aatcaaggaaagaagtgagaggtataactttcaaatttcacacgaacaaggaacttcaagcagc 2748928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 2797028 - 2797291
Alignment:
Q  5 ataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgatgcatggagtcaaacatccaggat 104  Q
    ||||||||||||||||||||  |||| |||||||| |||||||||||||||||||||||||||||||||  |||||||||| | | | | | ||| ||||    
T  2797028 ataagaacttgggtgaagcatctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcagctgatgcatagggcctatcctccgggat 2797127  T
Q  105 gtggggcattagcctacaagattgcaagcccaattaaaactttgattccccgtcatcagatagcatctgagattcaggacattaaggtgtcacttcgtgg 204  Q
    | ||  | |||| || |||||||||||| | ||| ||||| |||||| ||| ||| |||||||||||||||||| || |||||||| | ||| |||||||    
T  2797128 gcggatctttagtctgcaagattgcaagtctaatcaaaacattgatttcccttcaccagatagcatctgagattaagaacattaagatatcaattcgtgg 2797227  T
Q  205 aattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatcatcaagcagc 268  Q
    ||| ||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||    
T  2797228 aatcaaggaaagaagtgagaggtataactttcaaatttcacagacaccaggatcatcaagcagc 2797291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 5412574 - 5412813
Alignment:
Q  5 ataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgatgcatggagtcaaacatccaggat 104  Q
    |||||||| |||||||||||  |||| |||||||| ||||||||||||||||||||||| ||||||| | |||| |||||| | ||||| | ||  ||||    
T  5412574 ataagaacatgggtgaagcatatgagagaagcatcatttcgcattgaagatgtcattgacgaataccatcggctaatgcatagggtcaatcctcttggat 5412673  T
Q  105 gtggggcattagcctacaagattgcaagcccaattaaaactttgattccccgtcatcagatagcatctgagattcaggacattaaggtgtcacttcgtgg 204  Q
    |  |  | |||| || |||||||||||||   || |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||    
T  5412674 gcagatctttagtctgcaagattgcaagcttgatcaaaactttgattccccatcatcagatagcatctgagattcaggacattaagttgtcaattcgtgg 5412773  T
Q  205 aattaaggaaagaagtgagaggtataactttcaaatttca 244  Q
    ||| ||||||||||||||||||||||||||||||||||||    
T  5412774 aatcaaggaaagaagtgagaggtataactttcaaatttca 5412813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 118 - 308
Target Start/End: Original strand, 2807050 - 2807240
Alignment:
Q  118 ctacaagattgcaagcccaattaaaactttgattccccgtcatcagatagcatctgagattcaggacattaaggtgtcacttcgtggaattaaggaaaga 217  Q
    |||||||||||||||||   | ||||||||||||||||||||||| ||||||||| |||| |  ||||||||||||||  |||| ||||| |||||||||    
T  2807050 ctacaagattgcaagcctggtcaaaactttgattccccgtcatcatatagcatctaagatccgagacattaaggtgtcggttcgcggaatcaaggaaaga 2807149  T
Q  218 agtgagaggtataactttcaaatttcacatgaacgaggatcatcaagcagctatagtactagagagacagaaaaaggaagatggcgtgatc 308  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||||||||| ||||||||||||||||    
T  2807150 agtgagaggtataacttacaaatttcacatgaacaaggatcatcaagccgcaacagcactagagagacagaaaatggaagatggcgtgatc 2807240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 308
Target Start/End: Original strand, 2768736 - 2769042
Alignment:
Q  5 ataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgatgcatggagtcaaacatccaggat 104  Q
    ||||||||||||||||||||  |||| |||||||| ||||||||||||||||||||||||||||||||| || |||  ||| | | ||| | |||  ||     
T  2768736 ataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacccatagggccaatcgtcccagac 2768835  T
Q  105 gtggggcattagcctacaagattgcaagcccaattaaaactttgattccccgtcatcagatagcatctgagattcaggacattaaggtgtcacttcgtgg 204  Q
    | ||  | |||  || |||||||||||||| ||| |||||||||| |||||||||| | || ||||  |||||||||||||||||| ||||| |||||||    
T  2768836 gcggatctttaatcttcaagattgcaagcctaatcaaaactttgactccccgtcataaaattgcattagagattcaggacattaagttgtcaattcgtgg 2768935  T
Q  205 aattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatcatcaagcagct---atagtactagagagacagaaaaaggaagatgg 301  Q
    ||| ||||||||||| |||||||||| |||||||| ||||||||||| |||||| |||| ||||    | |||| | ||||| ||||||  |||||||||    
T  2768936 aatcaaggaaagaagcgagaggtatagctttcaaacttcacatgaacaaggatcctcaaacagcaggaacagtagtggagagtcagaaagtggaagatgg 2769035  T
Q  302 cgtgatc 308  Q
    |||||||    
T  2769036 cgtgatc 2769042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 265
Target Start/End: Complemental strand, 2856281 - 2856021
Alignment:
Q  5 ataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgatgcatggagtcaaacatccaggat 104  Q
    ||||||||||||||||||||  |||| |||||||| ||||||||||||||||||||||||||||||||| || |||| ||| | | ||| | ||  |||     
T  2856281 ataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgatacatagggccaatcctcatggac 2856182  T
Q  105 gtggggcattagcctacaagattgcaagcccaattaaaactttgattccccgtcatcagatagcatctgagattcaggacattaaggtgtcacttcgtgg 204  Q
    ||||  | |||| | ||||| || |||||| ||| |||||||||||||||| |||| | || ||||| |||||||||||||| ||| ||||| |||||||    
T  2856181 gtggatctttagtcaacaaggttacaagccgaatcaaaactttgattccccatcataaaattgcatcagagattcaggacatcaagttgtcaattcgtgg 2856082  T
Q  205 aattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatcatcaagc 265  Q
    ||| |||||||||||  ||||||||||||||||||||||||| || | |||||| ||||||    
T  2856081 aatcaaggaaagaagccagaggtataactttcaaatttcacacgagcaaggatcctcaagc 2856021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 121 - 268
Target Start/End: Original strand, 2790150 - 2790297
Alignment:
Q  121 caagattgcaagcccaattaaaactttgattccccgtcatcagatagcatctgagattcaggacattaaggtgtcacttcgtggaattaaggaaagaagt 220  Q
    |||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| |  |||||||| | ||| |||||||||| ||||||||||||    
T  2790150 caagattgcaagcctaatcaaaactttgattccccatcatcagatagcatctgagattaaaaacattaagatatcaattcgtggaatcaaggaaagaagt 2790249  T
Q  221 gagaggtataactttcaaatttcacatgaacgaggatcatcaagcagc 268  Q
    ||||||||||||||||||||||||||   || ||||||||||||||||    
T  2790250 gagaggtataactttcaaatttcacagacaccaggatcatcaagcagc 2790297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 308
Target Start/End: Original strand, 2758881 - 2759187
Alignment:
Q  5 ataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgatgcatggagtcaaacatccaggat 104  Q
    |||||||| |||||||||||  |||| |||||||||||||||||||||||| | ||||| ||||||||| ||||||| |||   | ||| | ||| ||      
T  2758881 ataagaacatgggtgaagcatatgagagaagcatcgtttcgcattgaagatataattgacgaataccttcggctgatccatacggccaatcctcctggta 2758980  T
Q  105 gtggggcattagcctacaagattgcaagcccaattaaaactttgattccccgtcatcagatagcatctgagattcaggacattaaggtgtcacttcgtgg 204  Q
    | ||  |  ||  | |||||||| |||||||||| ||||||||||||||||||||  | || ||||| |||||||| ||||| ||| || || |||  ||    
T  2758981 gcggatctgtattcaacaagattacaagcccaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaattcacgg 2759080  T
Q  205 aattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatcatca---agcagctatagtactagagagacagaaaaaggaagatgg 301  Q
    ||| ||||||||||| | |||||||||||||||||||||| |||||| |||||| |||   |||||| | | |||   ||||| |||||| |||||||||    
T  2759081 aatcaaggaaagaagcgtgaggtataactttcaaatttcaaatgaacaaggatcctcaaacagcagcaacactaccgaagagaaagaaaatggaagatgg 2759180  T
Q  302 cgtgatc 308  Q
    |||||||    
T  2759181 cgtgatc 2759187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 2818224 - 2818477
Alignment:
Q  5 ataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgatgcatggagtcaaacatccaggat 104  Q
    |||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||    |||| ||| |   |||   ||||||||    
T  2818224 ataagaacatgggtgaagcaagtgagagatgcatcatttcgcattgaagatgtcattgatgaataccttcttttgatccataggaccaattctccaggat 2818323  T
Q  105 gtggggcattagcctacaagattgcaagcccaattaaaactttgattccccgtcatcagatagcatctgagattcaggacattaaggtgtcacttcgtgg 204  Q
    |  |  | || |  | ||||||| ||||   ||| || ||||||| ||||||| || | || ||||| |||||||||||||| ||| ||||| |||||||    
T  2818324 gcagatctttggtatgcaagattccaagattaatgaagactttgactccccgttatgaaattgcatcagagattcaggacatcaagttgtcaattcgtgg 2818423  T
Q  205 aattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatc 258  Q
    ||| ||||||||||| |||||||||||||| |||||||| ||||||| ||||||    
T  2818424 aatcaaggaaagaagcgagaggtataacttccaaatttcgcatgaacaaggatc 2818477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 268
Target Start/End: Complemental strand, 2839071 - 2838811
Alignment:
Q  5 ataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgatgcatggagtcaaacatccaggat 104  Q
    ||||||||||||||||||||  |||| |||||||| ||||||||||||||||||||||||||||||||| | || |||||| | | ||| | ||| ||||    
T  2839071 ataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcgactaatgcatagggccaatcctcctggat 2838972  T
Q  105 gtggggcattagcctacaagattgcaagcccaattaaaactttgattccccgtcatcagatagcatctgagattcaggacattaaggtgtcacttcgtgg 204  Q
    |  |  | |||   | || || | ||||   ||| ||||||||||||||||||||  | || ||||| |||||||| ||||| ||| || ||  ||  ||    
T  2838971 gcagatcttta---tgcatgactccaaggttaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaactcacgg 2838875  T
Q  205 aattaaggaaagaagtgagaggtataactttcaaatttcacatgaacgaggatcatcaagcagc 268  Q
    ||| ||| ||||||| |||||||||||||||||||||||| |||||| |||||| |||||||||    
T  2838874 aatcaagaaaagaagcgagaggtataactttcaaatttcaaatgaacaaggatcctcaagcagc 2838811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 2755711 - 2755779
Alignment:
Q  5 ataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaatacctt 73  Q
    ||||||||||||||||||||  |||| |||||||| |||||||||||||||||||||||||||||||||    
T  2755711 ataagaacttgggtgaagcatatgagagaagcatcatttcgcattgaagatgtcattgatgaatacctt 2755779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 2790025 - 2790105
Alignment:
Q  5 ataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgatgcat 85  Q
    ||||||||||||||||||||  |||| |||||||| ||||||||||||||| |||| |||||||||||| |||| ||||||    
T  2790025 ataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcat 2790105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 2806931 - 2807008
Alignment:
Q  8 agaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgatgcat 85  Q
    ||||||||||| |||||  || | |||||||| ||||||||||||||| |||| |||||||||| | |||||||||||    
T  2806931 agaacttgggtaaagcagctgcgcgaagcatcatttcgcattgaagatatcatcgatgaataccatcggctgatgcat 2807008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 30989995 - 30989910
Alignment:
Q  137 attaaaactttgattccccgtcatcagatagcatctgagattcaggacattaaggtgtcacttcgtggaattaaggaaagaagtga 222  Q
    ||||||||| |||| || |||| ||  ||||||||||||||||| |||||||||  |||  ||||||  || ||||||||||||||    
T  30989995 attaaaactgtgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaaggaaagaagtga 30989910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 3200625 - 3200681
Alignment:
Q  10 aacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatga 66  Q
    |||||||||||||||  | || |||||||| |||||||| |||||||| ||||||||    
T  3200625 aacttgggtgaagcagctaagagaagcatcttttcgcatagaagatgtgattgatga 3200681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 3357823 - 3357767
Alignment:
Q  10 aacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatga 66  Q
    |||||||||||||||  | || |||||||| |||||||| |||||||| ||||||||    
T  3357823 aacttgggtgaagcagctaagagaagcatcttttcgcatagaagatgtgattgatga 3357767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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