View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_58 (Length: 304)
Name: NF9357_low_58
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 21018084 - 21017795
Alignment:
| Q |
20 |
tgatgttgcttgatttggtaggttttcctttaactataaatatgtttttagttgttgaacaaatttttagttaaatcctgcattaaacactgcggcatgc |
119 |
Q |
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| T |
21018084 |
tgatgttgcttgatttggtaggttttcctttaactataaatatgtttttagttgttgaacaaatttttagttaaatcctgtattcaacactgcggcatgc |
21017985 |
T |
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| Q |
120 |
attaatttcttcacgatgttctatacgctcaagcatcgttatttagtgtatcatcattcctttctcaatacttgat---------------attttgtga |
204 |
Q |
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| T |
21017984 |
attaatttcttcaatatgttctatacgctcaagcatcattatttagtgtatcatcattcctttctcaatacttgatatttgttttattgatattttgtga |
21017885 |
T |
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| Q |
205 |
aagtttcttcaatgaccaaaactttacgttttactaatttttgaagggaaggttacttttattttgcttagatatgttttggtccctatg |
294 |
Q |
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| T |
21017884 |
aagtttcttcaatgaccaaaactttacgttttactaattttttaagggagggttgcttttattttgcttagatatgttttggtccctatg |
21017795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 1429725 - 1429811
Alignment:
| Q |
113 |
ggcatgcattaatttcttcacgatgttctatacgctcaagcatcgttatttagtgtatcatcattcctttctcaatacttgatattt |
199 |
Q |
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| T |
1429725 |
ggcatgcattgatctcttcacaatgttctatatgctcaagcatcattatctagtgtatcattatcccttgctcaatacttaatattt |
1429811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 1436212 - 1436273
Alignment:
| Q |
20 |
tgatgttgcttgatttggtaggttttcctttaactataaatatgtttttagttgttgaacaa |
81 |
Q |
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| T |
1436212 |
tgatattgcttgattgggtaggttttcctttaactttaaatatgtcattagtagttgaacaa |
1436273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 1436299 - 1436348
Alignment:
| Q |
82 |
atttttagttaaatcctgcattaaacactgcggcatgcattaatttcttc |
131 |
Q |
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| T |
1436299 |
atttttagttaaattctgcctccaacactgtggcatgcattaatttcttc |
1436348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 1441716 - 1441773
Alignment:
| Q |
114 |
gcatgcattaatttcttcacgatgttctatacgctcaagcatcgttatttagtgtatcat |
173 |
Q |
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| T |
1441716 |
gcatgaattaatctcttcataatgttctatac--tcaagcatcattatttagtgtatcat |
1441773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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