View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_59 (Length: 304)
Name: NF9357_low_59
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 7829300 - 7829029
Alignment:
| Q |
20 |
cacataaagtgtcatagaaagtgtgcctcatcatcaatgttaattgtttgcttctgtgtgttttggcaatttagtacactgaaaggattgaattcatgcc |
119 |
Q |
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| T |
7829300 |
cacataaagtgtcatagaaagtgtgcctcatcatcaatgttaattgtttgcttctgtgtgttttggcaatttagtacactgaaaggattgaattcatgcc |
7829201 |
T |
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| Q |
120 |
cacttacttacacttaccagttcaggcatgcagctgcaacattttggacatgacactgcaaagcacacattttcaaggtggtcacatgctattctctcta |
219 |
Q |
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| T |
7829200 |
cac----ttacacttaccagttcaggcatgcagctgcaacattttggacatgacactgcaaaacacacattttcaaggtggtcacatgctattctctcta |
7829105 |
T |
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| Q |
220 |
actctat-atatgtaaatgtaaattgtcatctgattctggccactttaattacattttacatgtcacacacctatg |
294 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7829104 |
actctataatatgtaaatgtaaattgtcatctgattctcgccactttaattacattttacatgtcacacacctatg |
7829029 |
T |
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