View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_6 (Length: 518)
Name: NF9357_low_6
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_6 |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 19 - 509
Target Start/End: Original strand, 32464998 - 32465495
Alignment:
| Q |
19 |
atgttggggttatacataagaatgggtatatggagattaaggataggacaaaagatgtgataataagtggtggagagaatatgagtagtgtggaggttga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32464998 |
atgttggggttatacataagaatgggtatatggagattaaggataggacaaaagatgtgataataagtggtggagagaatatgagtagtgtggaggttga |
32465097 |
T |
|
| Q |
119 |
ggctgttttgtatatgcatccggcggttaaggaggcggcggtggtggcgaggccagatgagttttggggagagacgccgtgtgcgtttgtgagtttgaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
32465098 |
ggctgttttgtatatgcatccggcggttaaggaggcggcggtggtggcgaggccggatgagttttggggcgagacgccgtgtgcatttgtgagtttgaat |
32465197 |
T |
|
| Q |
219 |
gacgagttgaaggaagaggagataccgacggagaaggaggttaaagagttttgtagagagaagttgccacattttatggtgcctaagacggttgtgttta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32465198 |
gacgagttgaaggaagaggagataccgacggagaaggaggttaaggagttttgtagagagaagttgccacattttatggtgcctaagacggttgtgttta |
32465297 |
T |
|
| Q |
319 |
aggaagagttgccaaagacttcaaccggaaagattcaaaaacatgtgcttaggagggttgctagggctatggggtccttgccaatactaccaccactact |
418 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32465298 |
aggaggagttgccaaagacttcaactggaaagattcaaaaacatgtgcttagaagggttgctagggctatggggtccttgccaatactaccaccactact |
32465397 |
T |
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| Q |
419 |
acttccaagtcgcatttaatcatgcaacatgc-------ttcccattaatgatttatgcatttttgagatgaagagggagagagtgagagagtataat |
509 |
Q |
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| T |
32465398 |
acttccaagtcgcatttaatcatgcaacatgcttcccaattcccattaatgatttatgcatttttgagatgaagagggagagaatgagagagtataat |
32465495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 32456137 - 32455775
Alignment:
| Q |
19 |
atgttggggttatacataagaatgggtatatggagattaaggataggacaaaagatgtgataataagtggtggagagaatatgagtagtgtggaggttga |
118 |
Q |
| |
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|||||| |||||| ||| || |||||||| |||||||||| |||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32456137 |
atgttgcggttatgcatgaggatgggtatttggagattaaagataggtcaaaagatttgataataagtggcggagagaatatgagtagtgtggaggttga |
32456038 |
T |
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| Q |
119 |
ggctgttttgtatatgcatccggcggttaaggaggcggcggtggtggcgaggccagatgagttttggggagagacgccgtgtgcgtttgtgagtttgaat |
218 |
Q |
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| T |
32456037 |
gggggttttgtatatgcattcggcggttaaggaggcggcggtggtggcgagaccagatgatttttggggggagacgccgtgtgggtttgtgagtttgaaa |
32455938 |
T |
|
| Q |
219 |
gacgagttgaaggaagaggagataccgacggagaaggaggttaaagagttttgtagagagaagttgccacattttatggtgcctaagacggttgtgttta |
318 |
Q |
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| T |
32455937 |
gatgaattgaagaagaatgatattccgactgataatgagattaaggagttttgtaaagagaagttgccgcattttatgatgcctaaaacaattgtgttta |
32455838 |
T |
|
| Q |
319 |
aggaagagttgccaaagacttcaaccggaaagattcaaaaacatgtgcttaggagggttgcta |
381 |
Q |
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| | || ||||||||||| |||||||||||| ||||||||||||||||||| | |||||||| |
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| T |
32455837 |
tgaaggaattgccaaagacatcaaccggaaaggttcaaaaacatgtgcttagaaaggttgcta |
32455775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 40 - 355
Target Start/End: Complemental strand, 32471852 - 32471537
Alignment:
| Q |
40 |
atgggtatatggagattaaggataggacaaaagatgtgataataagtggtggagagaatatgagtagtgtggaggttgaggctgttttgtatatgcatcc |
139 |
Q |
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|||||||| | ||||| || |||||| ||||||||||||| || |||||||| |||||| |||||||||||||||||||| | ||||||||| ||||| |
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| T |
32471852 |
atgggtatttagagataaaagataggtcaaaagatgtgattattagtggtggtgagaatttgagtagtgtggaggttgagtcggttttgtatggacatcc |
32471753 |
T |
|
| Q |
140 |
ggcggttaaggaggcggcggtggtggcgaggccagatgagttttggggagagacgccgtgtgcgtttgtgagtttgaatgacgagttgaaggaagaggag |
239 |
Q |
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|||||| || ||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||| || | |||||||||| ||| |
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| T |
32471752 |
ggcggtgaatgaggcggcggtggtggcgagggaggatgagttttggggggagacaccgtgtgcttttgtgagtttgaaagaagggttgaaggaaagggat |
32471653 |
T |
|
| Q |
240 |
ataccgacggagaaggaggttaaagagttttgtagagagaagttgccacattttatggtgcctaagacggttgtgtttaaggaagagttgccaaagactt |
339 |
Q |
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| T |
32471652 |
ataccaacggagaaagagatagttgagtactgtaggaagaatttgccgcattatatggttccaaaaacggtggtgtttaaagatgagcttccaaagactt |
32471553 |
T |
|
| Q |
340 |
caaccggaaagattca |
355 |
Q |
| |
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| T |
32471552 |
ctaccgggaaaattca |
32471537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 175; Significance: 5e-94; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 24428 - 24790
Alignment:
| Q |
19 |
atgttggggttatacataagaatgggtatatggagattaaggataggacaaaagatgtgataataagtggtggagagaatatgagtagtgtggaggttga |
118 |
Q |
| |
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|||||| |||||| ||| || |||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
24428 |
atgttgcggttatgcatgaggatgggtatttggagattaaggataggttaaaagatgtgataataagtggtggggagaatatgagtagtgtggaagttga |
24527 |
T |
|
| Q |
119 |
ggctgttttgtatatgcatccggcggttaaggaggcggcggtggtggcgaggccagatgagttttggggagagacgccgtgtgcgtttgtgagtttgaat |
218 |
Q |
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|| ||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24528 |
gggtgttttgtacatgcatcccgcggttaaggaggcggcggtggtggctaggccggatgatttttggggagagacgccgtgtgcgtttgtgagtttgaag |
24627 |
T |
|
| Q |
219 |
gacgagttgaaggaagaggagataccgacggagaaggaggttaaagagttttgtagagagaagttgccacattttatggtgcctaagacggttgtgttta |
318 |
Q |
| |
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|| || ||||| ||| | || || || || || | |||| |||| |||||||||| ||| ||||||||||||||||| |||||| || ||||| | | |
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| T |
24628 |
gatgaattgaatgaaaacgatattccaactgacatggagattaagaagttttgtagggaggagttgccacattttatgacgcctaaaacaattgtgatca |
24727 |
T |
|
| Q |
319 |
aggaagagttgccaaagacttcaaccggaaagattcaaaaacatgtgcttaggagggttgcta |
381 |
Q |
| |
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| | || |||||||||||||||||||||||| || |||||||||||||||| | |||||||| |
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|
| T |
24728 |
tgaaggaattgccaaagacttcaaccggaaaggttaaaaaacatgtgcttagaaaggttgcta |
24790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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