View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9357_low_62 (Length: 294)
Name: NF9357_low_62
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_62 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 32702750 - 32702471
Alignment:
| Q |
1 |
catgtaaaacaatcaatcacaaatttatattgatacaaaatttctaccgccgcttgtcaacgaccaatcttcgttatgaatctataatcttcgttatgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
32702750 |
catgtaaaacaatcaatcacaaatttatattgatacaaaatttctaccgccgcctgacaacgaccaatcttcgttatgaatctatattctttgttatgaa |
32702651 |
T |
|
| Q |
101 |
tccgtggaatgcataagatggttttttccctccaatcagatttttcgtatgcatgagtcaaaaattaaacatcgatctgaccatatttataaagttttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
32702650 |
tccgtggaatgcataagatggttttttccctccaatcagatttttcgtatgcatgagtcaaaaattaaacatcgatctgaccatatttataaag-tataa |
32702552 |
T |
|
| Q |
201 |
gtttcttatcatttgaatctgtaaagaaagtcaggcgagcgagcaaagttttttcgttccgccacttaaactgttgtttct |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
32702551 |
gtttcttatcatttgaatctgtaaagaaagtcaggcgggcgagcaaaaatttttcgttccaccacttaaactgttgtttct |
32702471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University