View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9357_low_65 (Length: 280)

Name: NF9357_low_65
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9357_low_65
NF9357_low_65
[»] chr3 (21 HSPs)
chr3 (19-261)||(2838531-2838773)
chr3 (27-261)||(2855741-2855975)
chr3 (34-261)||(2769049-2769276)
chr3 (27-261)||(2748968-2749202)
chr3 (27-261)||(5412859-5413093)
chr3 (27-261)||(2759187-2759421)
chr3 (27-261)||(2807240-2807474)
chr3 (27-261)||(2818530-2818764)
chr3 (27-261)||(2797334-2797568)
chr3 (34-178)||(2790347-2790491)
chr3 (136-197)||(21945671-21945732)
chr3 (136-197)||(22104770-22104831)
chr3 (136-197)||(22187035-22187096)
chr3 (141-197)||(21930473-21930529)
chr3 (141-197)||(22028052-22028108)
chr3 (141-197)||(22034569-22034625)
chr3 (142-197)||(22052786-22052841)
chr3 (141-228)||(22208072-22208159)
chr3 (147-205)||(22368262-22368320)
chr3 (144-193)||(22436996-22437045)
chr3 (141-197)||(22179469-22179525)
[»] scaffold0691 (1 HSPs)
scaffold0691 (27-261)||(6083-6317)
[»] chr8 (1 HSPs)
chr8 (136-197)||(27294595-27294656)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 2838773 - 2838531
Alignment:
Q  19 ggcacgaccctcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaaaagaacaattgtctggttggctattggatggtgc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||| || | | ||||||| ||||||| |||||    
T  2838773 ggcacgaccctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaagagaagaaatatatggttggttattggagggtgc 2838674  T
Q  119 agctgagcgcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaacggcaaacttt 218  Q
    |||||||||| |||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||    
T  2838673 agctgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggtaacagcaaacttt 2838574  T
Q  219 gattgtcgtgcttgcgtcacagtttctcaatcatacactgtga 261  Q
    ||||||  |||||||||||||||||||||||||||||||||||    
T  2838573 gattgttatgcttgcgtcacagtttctcaatcatacactgtga 2838531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 27 - 261
Target Start/End: Complemental strand, 2855975 - 2855741
Alignment:
Q  27 cctcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaaaagaacaattgtctggttggctattggatggtgcagctgagc 126  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||| |||||||||||||| ||||||| |||  | ||||||    
T  2855975 cctcgactgtcttcccttttcattgaagaaacagaagttgtaggcattgaaggcccaaaagaagaattgtctggttggttattggaaggtatatctgagc 2855876  T
Q  127 gcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaacggcaaactttgattgtcg 226  Q
    ||  ||||||||||||||| |||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||    
T  2855875 gcaaagtgatttcagtggtgggaatggggggtataggaaaaactactcttgccaagctaatttttgacagccaaaaggtaacaacaaactttgattgtcg 2855776  T
Q  227 tgcttgcgtcacagtttctcaatcatacactgtga 261  Q
    ||||||| |||||||||||||||||||||||||||    
T  2855775 tgcttgcatcacagtttctcaatcatacactgtga 2855741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 34 - 261
Target Start/End: Original strand, 2769049 - 2769276
Alignment:
Q  34 tgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaaaagaacaattgtctggttggctattggatggtgcagctgagcgcgcagt 133  Q
    |||||||||| || |||||||||||||||||||||||| | ||||||| || |||| |||| | ||||||| ||||||| ||||||||| ||||| ||||    
T  2769049 tgtcttccctctttattgaagaaacagaaattgtaggattggaaggcccaagagaagaattatttggttggttattggagggtgcagctaagcgcacagt 2769148  T
Q  134 gatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaacggcaaactttgattgtcgtgcttgc 233  Q
    ||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  2769149 gatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaaactagtttatgacagccaaaaggtaactgcaaactttgattgtcgtgcttgc 2769248  T
Q  234 gtcacagtttctcaatcatacactgtga 261  Q
     |||||||||||||||||||||||||||    
T  2769249 atcacagtttctcaatcatacactgtga 2769276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 27 - 261
Target Start/End: Original strand, 2748968 - 2749202
Alignment:
Q  27 cctcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaaaagaacaattgtctggttggctattggatggtgcagctgagc 126  Q
    |||||||||||||| ||||| ||||||||||||||| |||| || ||||||| || ||||||| || ||||||||||| |||||||||||| ||||||||    
T  2748968 cctcgactgtcttctctttttattgaagaaacagaagttgttggtattgaagtcccaaaagaagaactgtctggttggttattggatggtgaagctgagc 2749067  T
Q  127 gcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaacggcaaactttgattgtcg 226  Q
    || | ||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||||| | ||| |||||||||||||    
T  2749068 gcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaaaaaggtatcagcacactttgattgtcg 2749167  T
Q  227 tgcttgcgtcacagtttctcaatcatacactgtga 261  Q
    |||||||||||||||||||||||| ||||||||||    
T  2749168 tgcttgcgtcacagtttctcaatcttacactgtga 2749202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 27 - 261
Target Start/End: Original strand, 5412859 - 5413093
Alignment:
Q  27 cctcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaaaagaacaattgtctggttggctattggatggtgcagctgagc 126  Q
    ||||||||||||||||| ||||||  |||||||||| |||||||||||||||| | ||||||| |||||||||||||| |||||||||||||||| || |    
T  5412859 cctcgactgtcttccctattcattacagaaacagaagttgtaggaattgaaggtccaaaagaagaattgtctggttggttattggatggtgcagcggaac 5412958  T
Q  127 gcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaacggcaaactttgattgtcg 226  Q
    |  |||| || ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| | ||| ||||||||||| |    
T  5412959 gtacagtcatatcagtggtaggaatggggggcctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggtatcagcacactttgattgttg 5413058  T
Q  227 tgcttgcgtcacagtttctcaatcatacactgtga 261  Q
    ||||||||| |||||||||||||||||||||||||    
T  5413059 tgcttgcgtaacagtttctcaatcatacactgtga 5413093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 27 - 261
Target Start/End: Original strand, 2759187 - 2759421
Alignment:
Q  27 cctcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaaaagaacaattgtctggttggctattggatggtgcagctgagc 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || | | ||||||| ||||||| ||| ||||||| |    
T  2759187 cctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaaaagaagaactatatggttggttattggagggttcagctgaac 2759286  T
Q  127 gcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaacggcaaactttgattgtcg 226  Q
    || ||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||  || | ||||||||||     
T  2759287 gcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgccaagctagtttttgacagccaaaaggtaacaacacagtttgattgtca 2759386  T
Q  227 tgcttgcgtcacagtttctcaatcatacactgtga 261  Q
     |||||| ||  |||||||||||||||||||||||    
T  2759387 agcttgcatcgtagtttctcaatcatacactgtga 2759421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 27 - 261
Target Start/End: Original strand, 2807240 - 2807474
Alignment:
Q  27 cctcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaaaagaacaattgtctggttggctattggatggtgcagctgagc 126  Q
    |||||||||||||||||||| |||||||||| ||||||||||||| |||||  || || |||| || |||||| |||| ||||||| |||| ||||||||    
T  2807240 cctcgactgtcttccctttttattgaagaaagagaaattgtaggatttgaattcccaagagaagaaatgtctgtttggttattggagggtgtagctgagc 2807339  T
Q  127 gcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaacggcaaactttgattgtcg 226  Q
    || | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||  || |||||||||||||    
T  2807340 gcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaacaacacactttgattgtcg 2807439  T
Q  227 tgcttgcgtcacagtttctcaatcatacactgtga 261  Q
    ||||||| || ||||||||||||||||||||||||    
T  2807440 tgcttgcatcgcagtttctcaatcatacactgtga 2807474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 27 - 261
Target Start/End: Original strand, 2818530 - 2818764
Alignment:
Q  27 cctcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaaaagaacaattgtctggttggctattggatggtgcagctgagc 126  Q
    |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||  | |||| || | | ||||||| ||||||| |||||||| ||||    
T  2818530 cctcgactgtcttctcttttcattgaagaaacagaaatcgtaggatttgaaggcccgagagaagaactatatggttggttattggagggtgcagccgagc 2818629  T
Q  127 gcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaacggcaaactttgattgtcg 226  Q
    || ||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||  || | |||||||||||    
T  2818630 gcacagtgatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgacagccaaaaggtaacaacacagtttgattgtcg 2818729  T
Q  227 tgcttgcgtcacagtttctcaatcatacactgtga 261  Q
     |||||| ||  |||||||||||||||||||||||    
T  2818730 agcttgcatcgtagtttctcaatcatacactgtga 2818764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 27 - 261
Target Start/End: Original strand, 2797334 - 2797568
Alignment:
Q  27 cctcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaaaagaacaattgtctggttggctattggatggtgcagctgagc 126  Q
    |||||||||||||||||||| ||||||||||| | |||||| ||| |||||||||  |  ||| |||||||||||||| || | || ||  |||||||||    
T  2797334 cctcgactgtcttccctttttattgaagaaactgcaattgtcggatttgaaggcccgagggaagaattgtctggttggttactagagggcacagctgagc 2797433  T
Q  127 gcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaacggcaaactttgattgtcg 226  Q
    || |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||  |||| |||||||||||    
T  2797434 gcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagtcaaaaggtaacaacaaaatttgattgtcg 2797533  T
Q  227 tgcttgcgtcacagtttctcaatcatacactgtga 261  Q
    ||||||| |||||||||||||||||||||| ||||    
T  2797534 tgcttgcatcacagtttctcaatcatacaccgtga 2797568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 2790347 - 2790491
Alignment:
Q  34 tgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaaaagaacaattgtctggttggctattggatggtgcagctgagcgcgcagt 133  Q
    ||||||||||||||||||||||||| | |||||| ||| |||||||||  |  ||| |||||||||||||| ||||||| ||  ||||||||||| ||||    
T  2790347 tgtcttcccttttcattgaagaaactgcaattgtcggatttgaaggcccgagggaagaattgtctggttggttattggagggcacagctgagcgcacagt 2790446  T
Q  134 gatttcagtggtaggaatgggaggtctaggaaaaactactcttgc 178  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||    
T  2790447 gatttcagtggttggaatgggaggtctaggaaaaaccactcttgc 2790491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 21945671 - 21945732
Alignment:
Q  136 tttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagc 197  Q
    |||| ||||||||||||||||| | ||||||||| ||||| ||||||  |||||||||||||    
T  21945671 tttccgtggtaggaatgggagggcaaggaaaaaccactctagccaagaaagtttttgacagc 21945732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 22104770 - 22104831
Alignment:
Q  136 tttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagc 197  Q
    |||| ||||||||||||||||| | ||||||||| ||||| ||||||  |||||||||||||    
T  22104770 tttcggtggtaggaatgggagggcaaggaaaaacaactctagccaagagagtttttgacagc 22104831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 22187035 - 22187096
Alignment:
Q  136 tttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagc 197  Q
    |||| ||||||||||||||||| | ||||||||| ||||| ||||||  |||||||||||||    
T  22187035 tttctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagc 22187096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 21930473 - 21930529
Alignment:
Q  141 gtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagc 197  Q
    ||||||||||||||||| | ||||||||| ||||| ||||||  |||||||||||||    
T  21930473 gtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagc 21930529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 22028052 - 22028108
Alignment:
Q  141 gtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagc 197  Q
    ||||||||||||||||| | ||||||||| ||||| ||||||  |||||||||||||    
T  22028052 gtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagc 22028108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 22034569 - 22034625
Alignment:
Q  141 gtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagc 197  Q
    ||||||||||||||||| | ||||||||| ||||| ||||||  |||||||||||||    
T  22034569 gtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagc 22034625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 22052786 - 22052841
Alignment:
Q  142 tggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagc 197  Q
    |||||||||||||||| | ||||||||| ||||| ||||||  |||||||||||||    
T  22052786 tggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagc 22052841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 22208072 - 22208159
Alignment:
Q  141 gtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaacggcaaactttgattgtcgtg 228  Q
    ||||| || |||||||| | ||| ||||| ||||||||||||| ||||||||||||| || |||| |  | | |||||||||||||||    
T  22208072 gtggttgggatgggagggcaaggtaaaacaactcttgccaagcaagtttttgacagcaaagaggttattggatactttgattgtcgtg 22208159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 22368320 - 22368262
Alignment:
Q  147 ggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggt 205  Q
    ||||||||||| || |||||||| ||||| ||||||  ||||||||||| |||||||||    
T  22368320 ggaatgggaggactgggaaaaaccactctagccaagaaagtttttgacaaccaaaaggt 22368262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 22437045 - 22436996
Alignment:
Q  144 gtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttga 193  Q
    |||||||||||||| | ||||||||||||||| ||||||  |||||||||    
T  22437045 gtaggaatgggagggcaaggaaaaactactctggccaagaaagtttttga 22436996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 22179469 - 22179525
Alignment:
Q  141 gtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagc 197  Q
    ||||| ||||||||||| | ||||||||| ||||| ||||||  |||||||||||||    
T  22179469 gtggtgggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagc 22179525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 261
Target Start/End: Complemental strand, 6317 - 6083
Alignment:
Q  27 cctcgactgtcttcccttttcattgaagaaacagaaattgtaggaattgaaggccaaaaagaacaattgtctggttggctattggatggtgcagctgagc 126  Q
    |||||| | ||| ||||||| ||||||||||| ||| |||||||| | ||||||| || |||  |||| | ||||||| |||||||  || |||||||||    
T  6317 cctcgattatctgccctttttattgaagaaactgaagttgtaggattcgaaggcccaagagaggaattatatggttggttattggagagtccagctgagc 6218  T
Q  127 gcgcagtgatttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagccaaaaggtaacggcaaactttgattgtcg 226  Q
    || | || |||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||  || | |||||||||||    
T  6217 gcaccgtaatttcagtggtaggaatgggaggtatagggaaaaccactcttgccaagctagtttttgacagccaaaaggtaacaacacaatttgattgtcg 6118  T
Q  227 tgcttgcgtcacagtttctcaatcatacactgtga 261  Q
    ||||||| || ||||||||||| ||||||| ||||    
T  6117 tgcttgcatcgcagtttctcaaacatacaccgtga 6083  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 27294595 - 27294656
Alignment:
Q  136 tttcagtggtaggaatgggaggtctaggaaaaactactcttgccaagctagtttttgacagc 197  Q
    |||| ||||||||||||||||| | ||||||||| ||||| | ||||  |||||||||||||    
T  27294595 tttctgtggtaggaatgggaggacaaggaaaaaccactctagtcaagaaagtttttgacagc 27294656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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