View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_66 (Length: 274)
Name: NF9357_low_66
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 49271849 - 49272090
Alignment:
| Q |
18 |
gcaaggactacccagaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgca |
117 |
Q |
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| T |
49271849 |
gcaaggactacccagaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgca |
49271948 |
T |
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| Q |
118 |
tcagggttacggattacatcaagagggcatgttttgtttcttgtatgtcctaatgtaatgcctccattgtcggcccaaagtggaaatacgtagtaacctt |
217 |
Q |
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| T |
49271949 |
tcagggttacggattacatcaagagggcatgttttgtttcttgtgtgtcctaatgtaatgcctccattgtcggcccaaagtggaaatacgtagtaacctt |
49272048 |
T |
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| Q |
218 |
cacctggtttaagagggttaccttgtttgtctactactgcct |
259 |
Q |
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| T |
49272049 |
cacctggtttaagagggttaccttgtttgtctactactgcct |
49272090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 49277772 - 49278013
Alignment:
| Q |
18 |
gcaaggactacccagaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgca |
117 |
Q |
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| T |
49277772 |
gcaaggactacccaatattggaatctcaacggtgagatcagtgagagttggaatgtaatcatgttcatattcatagaaataaactggcgagccaatggct |
49277871 |
T |
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| Q |
118 |
tcagggttacggattacatcaagagggcatgttttgtttcttgtatgtcctaatgtaatgcctccattgtcggcccaaagtggaaatacgtagtaacctt |
217 |
Q |
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| T |
49277872 |
tcagggttacggataacatcaagagggcatgttttgtttcttgtttgtcctaatgttatgcctccattgtcagcccaaagtggaaatacgtagtaacctt |
49277971 |
T |
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| Q |
218 |
cacctggtttaagagggttaccttgtttgtctactactgcct |
259 |
Q |
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| T |
49277972 |
cacctggtttaagagggttaccttgtttgtctactactgcct |
49278013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 161
Target Start/End: Original strand, 49269445 - 49269544
Alignment:
| Q |
62 |
gagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgt |
161 |
Q |
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| T |
49269445 |
gagttggaatgtgtttaaaacctggtgcagagaagtacactggcgagccgagttctttagggttacgaattacatcaagaggacatgttttgtttcttgt |
49269544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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