View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_67 (Length: 267)
Name: NF9357_low_67
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_67 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 24 - 254
Target Start/End: Original strand, 34765283 - 34765513
Alignment:
| Q |
24 |
gttggaacgaggaatgtgacaatgaactcattgtggttacggataataattttcacatgtgaattcatttgagctcaaatacaaacttattgtaaagctt |
123 |
Q |
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| T |
34765283 |
gttggaacgaggaatgtgacaatgaactcattgtggttacggataataattttcacatgtgaattcatttgagctcaaatacaaacttattgtaaagctt |
34765382 |
T |
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| Q |
124 |
gttgcatgaccaaactcttgaggcatgcaactggataagctgttatagctcaaatccaaaaaagttagcttctgaaaatttggtacagattttcaaattg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34765383 |
gttgcatgaccaaactcttgaggcatgcaactggataagctgttatagctcaaatccaaaaaagttagcttctgaaaatttggtacagattttcaaattg |
34765482 |
T |
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| Q |
224 |
aacctattaataatattattgttgagaataa |
254 |
Q |
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| T |
34765483 |
aacctattaataatattattgttgagaataa |
34765513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 90 - 254
Target Start/End: Original strand, 44015301 - 44015464
Alignment:
| Q |
90 |
atttgagctcaaatacaaacttattgtaaagcttgttgcatgaccaaactcttgaggcatgcaactggataagctgttatagctcaaatccaaaaaagtt |
189 |
Q |
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|||||||||||||| |||||| ||||| | |||||| ||||||||| |||| |||| |||| || |||||||| ||||| ||||||||||||| |||| |
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| T |
44015301 |
atttgagctcaaatccaaactgattgttaggcttgtaacatgaccaatctctggaggtatgctaccagataagctattataactcaaatccaaaagagtt |
44015400 |
T |
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| Q |
190 |
agcttctgaaaatttggtacagattttcaaattgaacctattaataatattattgttgagaataa |
254 |
Q |
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| T |
44015401 |
agcttctgtagatttctaacagattttggtattgagcctgttaataa-attattgttgagaataa |
44015464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 6440526 - 6440469
Alignment:
| Q |
24 |
gttggaacgaggaatgtgacaatgaactcattgtggttacggataataattttcacat |
81 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| |
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| T |
6440526 |
gttggaacgaggaatgtgacaatgaactcattgtggttaacgataatgaatttcacat |
6440469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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