View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_69 (Length: 261)
Name: NF9357_low_69
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_69 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 28470878 - 28471109
Alignment:
| Q |
1 |
atatatatatggagtctcttaaaccnnnnnnnn-ccatgactaatggtctacatttaaacgttagttggttttttagttgtcgaagtacaagaggaaaca |
99 |
Q |
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| T |
28470878 |
atatatatatggagtctcttaaaccaaaaaaaaaccatgactaatggtctacatttaaacgttagttggtttttttgttgtcgaagtacaagaggaaaca |
28470977 |
T |
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| Q |
100 |
ttagttagttatgccatactacattattatcttccaaatgtcattttcaaataacaaactagcattgaataattcctactatgttactcccaacccgcaa |
199 |
Q |
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| T |
28470978 |
ttagttagttatgccatactacattat------------gtcattttcaaataacaaactagcattgaataattcctactatgttactcccaacccgcaa |
28471065 |
T |
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| Q |
200 |
catctctttgcaaacattttctttttaacaaactaaaatagaat |
243 |
Q |
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| T |
28471066 |
catctctttgcaaacattttctttttaacaaaccaaaatagaat |
28471109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 36 - 243
Target Start/End: Complemental strand, 32207970 - 32207775
Alignment:
| Q |
36 |
atgactaatggtctacatttaaacgttagttggttttttagttgtcgaagtacaagaggaaacattagttagttatgccatactacattattatcttcca |
135 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32207970 |
atgactaatggtctacatttaaacgttagttggtttttttgttgtcgaagtacaagaggaaacattagttagttatgccatactacattat--------- |
32207880 |
T |
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| Q |
136 |
aatgtcattttcaaataacaaactagcattgaataattcctactatgttactcccaacccgcaacatctctttgcaaacattttctttttaacaaactaa |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32207879 |
---gtcattttcaaataacaaactagcattgaataattcctactatgttactcccaacccgcaacatctctttgcaaacattttctttttaacaaaccaa |
32207783 |
T |
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