View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9357_low_72 (Length: 256)
Name: NF9357_low_72
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_72 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 5 - 246
Target Start/End: Complemental strand, 52822360 - 52822125
Alignment:
| Q |
5 |
tattgtatggccatttggaggaaaactaattggaaaaagatcgtttgaaaaacagtccttnnnnnnnngtcacaaggccagctgggtaaaacttagttta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
52822360 |
tattgtatggccatttggaggaaaactaattggaaaaagatcgtttgaaaaacagtccttaaaaaaaagtcacaaggccagctgggtaaa-cttagttta |
52822262 |
T |
|
| Q |
105 |
aagcattaaaatcaaacaaaagccaaatgaatattttgaattggtccctcatgacagctcctctttaacgactcattactctcactataagtatacttta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
52822261 |
aagcattaaaatcaaacaaaagccaaatgattattttgaattggtccctcatgacagctcctctttaacgactcattactctcactataagtatac-tta |
52822163 |
T |
|
| Q |
205 |
ttccatgcagcttttatctatcagtcatcactaacaccaaac |
246 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52822162 |
ttccatgcagcttt----tatcagtcatcactaacaccaaac |
52822125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University