View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_74 (Length: 253)
Name: NF9357_low_74
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 16133966 - 16134191
Alignment:
| Q |
13 |
gtgttctaaatgtacaagtatggcaaaaacaccaaaagaagatgttgccggattatctcaaagaaagatccgatgttggattgctttcgataaacacagt |
112 |
Q |
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| T |
16133966 |
gtgttctaaatgtacaagtatggcaaaaacaccaaaagaagatgttgccggattatctcaaagaaagatccgatgttgaattgctttcgataaacacagt |
16134065 |
T |
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| Q |
113 |
tgttcagaagatcgctatattgcttctgaacttttgtaggaaatcaaaaccggaacaagtttcgttaagtaatttttagaatcaatttatggttatcgta |
212 |
Q |
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| T |
16134066 |
tgttcagaagatcgctacattgcttctgaacttttgtaggaaatcaaaaccggaacaagtttcgttaagtaatttttagaagtaattttt--acatagtt |
16134163 |
T |
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| Q |
213 |
gatcacgtttttactacttttacacaga |
240 |
Q |
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| T |
16134164 |
gttcacgtttttactacttttacacaga |
16134191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 31236323 - 31236233
Alignment:
| Q |
147 |
tgtaggaaatcaaaaccggaacaagtttcgttaagtaatttttagaatcaatttatggttatcgtagatcacgtttttactacttttacac |
237 |
Q |
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| T |
31236323 |
tgtaggaaatcaaaaccagagcaagttttcgtaagtactttctagaatcaatttatggttatggtagatcatgttttatctccttttacac |
31236233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 31252997 - 31252912
Alignment:
| Q |
131 |
attgcttctgaacttttgtaggaaatcaaaaccggaacaag---tttcgttaagtaatttttagaatcaatttatggttatcgtaga |
214 |
Q |
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| T |
31252997 |
attgcttctgaa-ttttataggaaatcaaaaccagaacaagttttttccttaagtaactttaagaatcagttttaggttatggtaga |
31252912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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