View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_76 (Length: 253)
Name: NF9357_low_76
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_76 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 32703215 - 32703463
Alignment:
| Q |
1 |
caagattaatcattgccgagtgatagtagaacatttgtatcaatatcatgataaccaaaaatatatattatatgttggataagtgctcaacaa-ttgttt |
99 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||| |
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| T |
32703215 |
caagattaatcattgccgagtgattgtagaaaatttgtatcaatatcatgataaccaaaaatatatattataagttagataagtgctcaacaattttttt |
32703314 |
T |
|
| Q |
100 |
tttagtagttttgtc----nnnnnnnnnttgttttttaattgtatttttaaaaaacaagaaatatttatgtcagtcactatgaaataatcgacaatcaat |
195 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
32703315 |
tttagtagttttgtcaaaaaaaaataatttgttttttaattgtatttttaaaaaacaagaaatatttaggtc-gtcactatgaaataatcgacaatcaat |
32703413 |
T |
|
| Q |
196 |
gtaagac-nnnnnnnnnnaacaaacaaaaatgaaatatattaacaccaaa |
244 |
Q |
| |
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||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
32703414 |
gtaagacttttttttttgaacaaacaaaaatggaatatattaacaccaaa |
32703463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 244
Target Start/End: Original strand, 30355815 - 30355846
Alignment:
| Q |
213 |
aacaaacaaaaatgaaatatattaacaccaaa |
244 |
Q |
| |
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| T |
30355815 |
aacaaacaaaaatgaaatatattaacaccaaa |
30355846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 244
Target Start/End: Complemental strand, 8942072 - 8942041
Alignment:
| Q |
213 |
aacaaacaaaaatgaaatatattaacaccaaa |
244 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
8942072 |
aacaaacaaaaatgaaatatattaacaccaaa |
8942041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 241
Target Start/End: Original strand, 42562933 - 42562961
Alignment:
| Q |
213 |
aacaaacaaaaatgaaatatattaacacc |
241 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
42562933 |
aacaaacaaaaatgaaatatattaacacc |
42562961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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