View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_81 (Length: 248)
Name: NF9357_low_81
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_81 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 2595043 - 2594824
Alignment:
| Q |
20 |
gtccacaacgaattttgtaactatgatttagactataatgaagagtagaaaattagagtatgaaattaaaaagaattaaagcattgcattagcaagtttt |
119 |
Q |
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| T |
2595043 |
gtccacaacaaattttgtaactatgatttagactataatgaagagtagaaaattagagtatgaaattaaaaagaattaaagcattgcattagcaagtttt |
2594944 |
T |
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| Q |
120 |
ctttaatataatgtaattctgcaatgttagaaaaccttaaaattgttttgcacaatataaattcatgtgagatgtatataatttactcaaataatttgaa |
219 |
Q |
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| T |
2594943 |
ctttaatataatgtaatgttgcaatgttagaaaaccttaaaattgttttgcacaatataaattcatgtgagatgtatataatttactcaaataatttgaa |
2594844 |
T |
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| Q |
220 |
tgttaatcaattagaataat |
239 |
Q |
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|||||||||||||||||||| |
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| T |
2594843 |
tgttaatcaattagaataat |
2594824 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 34001518 - 34001590
Alignment:
| Q |
107 |
attagcaagttttctttaatataatgtaattctgcaatgttagaaaaccttaaaattgttttgcacaatataa |
179 |
Q |
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|||| ||||||||| || || |||| |||| |||||||||||||| ||||||||||| |||||||||||||| |
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| T |
34001518 |
attaccaagttttcatttatgtaatataatgttgcaatgttagaaagccttaaaattggtttgcacaatataa |
34001590 |
T |
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