View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_83 (Length: 243)
Name: NF9357_low_83
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_83 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 33828609 - 33828824
Alignment:
| Q |
12 |
cagagagaaaatagataggccaatggttccagaggtaagaaagagctccaactgcatgaatgttgaaaggtttagcaaacttaagtaaaatacattttac |
111 |
Q |
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| T |
33828609 |
cagagagaaaatagataggccaatggttccagaggtaagaaagagctccaactgcatgaatgttgaaaggtttagcaaacttaagtaaaatacattatac |
33828708 |
T |
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| Q |
112 |
aaaatattgatagaaaatattcaaggtgcagaaacataaaaggcacctgaattaggttattacgatggttgtcaatctgcaaaatggaagaacaaaaaat |
211 |
Q |
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| T |
33828709 |
aaaatattgatagaaaatattcaaggtgcagaaacataaaaggcacctgaattaggttattacgatggttgtcaagctgcaaaatggaagaacaaaaaat |
33828808 |
T |
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| Q |
212 |
tattcatattacatgt |
227 |
Q |
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|||||||||||||||| |
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| T |
33828809 |
tattcatattacatgt |
33828824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 33839357 - 33839142
Alignment:
| Q |
12 |
cagagagaaaatagataggccaatggttccagaggtaagaaagagctccaactgcatgaatgttgaaaggtttagcaaacttaagtaaaatacattttac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33839357 |
cagagagaaaatagataggccaatggttccagaggtaagaaagagctccaactgcatgaatgttgaaaggtttagcaaacttaagtaaaatacattatac |
33839258 |
T |
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| Q |
112 |
aaaatattgatagaaaatattcaaggtgcagaaacataaaaggcacctgaattaggttattacgatggttgtcaatctgcaaaatggaagaacaaaaaat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33839257 |
aaaatattgatagaaaatattcaaggtgcagaaacataaaaggcacctgaattaggttattacgatggttgtcaagctgcaaaatggaagaacaaaaaat |
33839158 |
T |
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| Q |
212 |
tattcatattacatgt |
227 |
Q |
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|||||||||||||||| |
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| T |
33839157 |
tattcatattacatgt |
33839142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 33806724 - 33806795
Alignment:
| Q |
139 |
gcagaaacataaaaggcacctgaattaggttattacgatggttgtcaatctgcaaaatggaagaacaaaaaa |
210 |
Q |
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||||||||||| |||| |||||||| || | ||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
33806724 |
gcagaaacatagaaggtacctgaataagctgattacgatggttgtcaagctgcaaaatggaaaaacaaaaaa |
33806795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 33866194 - 33866265
Alignment:
| Q |
139 |
gcagaaacataaaaggcacctgaattaggttattacgatggttgtcaatctgcaaaatggaagaacaaaaaa |
210 |
Q |
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| T |
33866194 |
gcagaaacatagaaggtacctgaataagctgattacgatggttgtcaagctgcaaaatggaaaaacaaaaaa |
33866265 |
T |
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