View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9357_low_87 (Length: 241)
Name: NF9357_low_87
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_87 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 28611292 - 28611087
Alignment:
| Q |
14 |
cagagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaagttggtgaattt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28611292 |
cagagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaacgcacaaaacaaaactttcgctattagaaagttggtgaatct |
28611193 |
T |
|
| Q |
114 |
aaagtatcgggagggaagatcagttgccgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaagctggtgctggatgacgaatta |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
28611192 |
aaagtatcgggagggaagatcagttgccgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaagttggtgctggatgatgaatta |
28611093 |
T |
|
| Q |
214 |
caagca |
219 |
Q |
| |
|
|||||| |
|
|
| T |
28611092 |
caagca |
28611087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 14174586 - 14174790
Alignment:
| Q |
14 |
cagagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaagttggtgaattt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
14174586 |
cagagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctat-agaaagttggtgaatct |
14174684 |
T |
|
| Q |
114 |
aaagtatcgggagggaagatcagttgccgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaagctggtgctggatgacgaatta |
213 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
14174685 |
aaagtaccgagagggaagatcagttgccgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaagttggtgctggatgatgaatta |
14174784 |
T |
|
| Q |
214 |
caagca |
219 |
Q |
| |
|
|||||| |
|
|
| T |
14174785 |
caagca |
14174790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 12931315 - 12931520
Alignment:
| Q |
14 |
cagagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaagttggtgaattt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12931315 |
cagagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaagttggtgaatct |
12931414 |
T |
|
| Q |
114 |
aaagtatcgggagggaagatcagttgccgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaagctggtgctggatgacgaatta |
213 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| |
|
|
| T |
12931415 |
aaagtaccgggagggaagatcagttgccgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaagttggtgctgaatgatgaatta |
12931514 |
T |
|
| Q |
214 |
caagca |
219 |
Q |
| |
|
|||||| |
|
|
| T |
12931515 |
caagca |
12931520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 51303304 - 51303480
Alignment:
| Q |
15 |
agagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaagttggtgaattta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
51303304 |
agagacaaatgcccagactctgtggaagaacatcaaaaagatgtatcaaagaaagatcgcacaaaacaaaactttcgctattaaaaatttggtgaattta |
51303403 |
T |
|
| Q |
115 |
aagtatcgggagggaagatcagttgccgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaa |
191 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51303404 |
aagtatcgggagggaagatcagttgtcgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaa |
51303480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 24876505 - 24876330
Alignment:
| Q |
17 |
agacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaagttggtgaatttaaa |
116 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24876505 |
agacgaatgcccatactccatggaagaacatcgaaaatatatatcaaagaaataccgcacaaaacaaaactttcactattagaaagttggtgaatttaaa |
24876406 |
T |
|
| Q |
117 |
gtatcgggagggaagatcagttgccgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaag |
192 |
Q |
| |
|
||||| |||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
24876405 |
gtatcaggagggaagatcggttgccaagcacttgagtgactttcaatacttgctaaaccaattggttgccatgaag |
24876330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 38996890 - 38996692
Alignment:
| Q |
22 |
aatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaagttggtgaatttaaagtatc |
121 |
Q |
| |
|
|||| ||| ||| |||||| |||||| |||||||| |||||||||||||| ||||| |||||| | | | ||||||||||||||||| | |||||||| |
|
|
| T |
38996890 |
aatgtccaaactttgtggatgaacattgaaaagatttatcaaagaaagactccacaacacaaaattgttgatattagaaagttggtgattgtaaagtatt |
38996791 |
T |
|
| Q |
122 |
gggagggaagatcagttgccgagcacttgagtgactttcaagacttggtaaaccaattggttgccatgaagctggtgctggatgacgaattacaagcat |
220 |
Q |
| |
|
||| || ||||||||||| | ||||||| |||||||||||||||||||||||||||||||| | || || ||||| |||||||| |||||||||||| |
|
|
| T |
38996790 |
ggggggaaagatcagttgttaaacacttgattgactttcaagacttggtaaaccaattggttgtcttgtagttggtgttggatgacaaattacaagcat |
38996692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 38994438 - 38994363
Alignment:
| Q |
15 |
agagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttc |
90 |
Q |
| |
|
||||||||||||| | ||| |||||||| ||| ||||| |||||||||||||| |||||||||||||||| |||| |
|
|
| T |
38994438 |
agagacaaatgcctaaactttgtggaaggacagtgaaaatatgtatcaaagaaataccgcacaaaacaaaattttc |
38994363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University