View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_90 (Length: 239)
Name: NF9357_low_90
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_90 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 16134537 - 16134744
Alignment:
| Q |
14 |
ggaagtatatatcaaacatttaattcatttttataaaggatgtaagacttaccatttgaaccaaaactttctccattaattaattttgtaattttgatgt |
113 |
Q |
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| T |
16134537 |
ggaagtatatatcaaacatttaattcatttttataacgaatgtaagacttaccatttgaaccaaaactttctccattaattaattttgtaattttgatgt |
16134636 |
T |
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| Q |
114 |
tgttgtcacataacaaa-ttggtcatagtcatgtccttacacctaacaacatatacccatttttgtaccccactttcacatgcaccacatattgtgttat |
212 |
Q |
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| T |
16134637 |
tgt---cacataacaaaattggtcatagtcatgtccttacacctaacaacatatacccatttttgtaccccactttcacatgcaccacatattgtgttat |
16134733 |
T |
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| Q |
213 |
ctcgttataat |
223 |
Q |
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||||||||||| |
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| T |
16134734 |
ctcgttataat |
16134744 |
T |
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