View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_96 (Length: 229)
Name: NF9357_low_96
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_96 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 37245065 - 37245289
Alignment:
| Q |
1 |
cgtgcaggtctcattcagacttattttaggaacccttgggctatggtgtctcttgttgctgctttcttcctttttgctcttactattattcaaactatat |
100 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37245065 |
cgtgcaagtctcattcaaacttattttaggaacccttgggctatggtgtctcttgttgctgctttcttcctttttgctcttactattattcaaactatat |
37245164 |
T |
|
| Q |
101 |
acacagttggtcaattttatcaaaaggattgctagcaacacagtataccctttttgacacactctttttatggttaaaattcacatgcctggatcacatc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37245165 |
acacagttggtcaattttatcaaaaggattgctagcaacacagtatacccttttcgacacactctttttatggttaaaattcacatgcctggatcacatc |
37245264 |
T |
|
| Q |
201 |
aaattataagtcccatatagatatg |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
37245265 |
aaattataagtcccatatagatatg |
37245289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 37283527 - 37283654
Alignment:
| Q |
1 |
cgtgcaggtctcattcagacttattttaggaacccttgggctatggtgtctcttgttgctgctttcttcctttttgctcttactattattcaaactatat |
100 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37283527 |
cgtgcaagtctcattcaaacttattttaggaacccttgggctatggtgtctcttgttgctgctttcttcctttttgctcttactattattcaaactatat |
37283626 |
T |
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| Q |
101 |
acacagttggtcaattttatcaaaagga |
128 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
37283627 |
acacagttggtcaattttatcaaaagga |
37283654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 37965737 - 37965871
Alignment:
| Q |
8 |
gtctcattcagacttattttaggaacccttgggctatggtgtctcttgttgctgctttcttcctttttgctcttactattattcaaactatatacacagt |
107 |
Q |
| |
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||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| |||| ||||| | ||||||| ||||| ||||||||||| || |
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| T |
37965737 |
gtctcattcgtacttattttaggagcccttgggctatggtgtctcttgttgttgctaccttcatttttagttttactatcattcagactatatacacggt |
37965836 |
T |
|
| Q |
108 |
tggtcaattttatcaaaaggattgctagcaacaca |
142 |
Q |
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| T |
37965837 |
tcgtcaattttatcaaaaggagtgctaacaacaca |
37965871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 37319282 - 37319381
Alignment:
| Q |
9 |
tctcattcagacttattttaggaacccttgggctatggtgtctcttgttgctgctttcttcctttttgctcttactattattcaaactatatacacagtt |
108 |
Q |
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||||||||| ||||||||||| ||||| |||||||| || ||||||||||||||| | |||||||||||| | |||||| |||||||| ||||| ||||| |
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| T |
37319282 |
tctcattcaaacttattttagaaacccgtgggctattgtctctcttgttgctgctattttcctttttgctttaactattgttcaaactgtatactcagtt |
37319381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 16571957 - 16571841
Alignment:
| Q |
9 |
tctcattcagacttattttaggaacccttgggctatggtgtctcttgttgctgctttcttcctttttgctcttactattattcaaactatatacacagtt |
108 |
Q |
| |
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||||| ||| ||||||||||||||||||||| |||||||||| ||||||||||| |||| |||||||||||||||| |||||||||| ||| || || |
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| T |
16571957 |
tctcactcacacttattttaggaacccttggtctatggtgtcacttgttgctgccatctttctttttgctcttactagtattcaaactggttactcaatt |
16571858 |
T |
|
| Q |
109 |
ggtcaattttatcaaaa |
125 |
Q |
| |
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| |||||||||||||| |
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| T |
16571857 |
gcccaattttatcaaaa |
16571841 |
T |
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