View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9358_high_3 (Length: 369)

Name: NF9358_high_3
Description: NF9358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9358_high_3
NF9358_high_3
[»] chr4 (24 HSPs)
chr4 (15-329)||(22235192-22235506)
chr4 (113-227)||(5535706-5535819)
chr4 (148-229)||(46462407-46462488)
chr4 (127-223)||(32645532-32645628)
chr4 (120-240)||(56328471-56328591)
chr4 (160-227)||(26165941-26166008)
chr4 (142-217)||(52072799-52072874)
chr4 (148-218)||(26066416-26066486)
chr4 (115-176)||(22020110-22020171)
chr4 (160-229)||(32645533-32645602)
chr4 (121-165)||(27537056-27537100)
chr4 (121-209)||(38381976-38382064)
chr4 (115-182)||(39897103-39897170)
chr4 (157-207)||(30206526-30206576)
chr4 (159-213)||(30990630-30990684)
chr4 (143-217)||(36491047-36491121)
chr4 (163-229)||(46395613-46395679)
chr4 (148-229)||(11045674-11045755)
chr4 (148-229)||(11047522-11047603)
chr4 (153-229)||(1140901-1140977)
chr4 (126-214)||(2865015-2865103)
chr4 (150-230)||(21142119-21142199)
chr4 (153-229)||(31089918-31089994)
chr4 (113-165)||(54713090-54713142)
[»] chr3 (25 HSPs)
chr3 (139-229)||(32711238-32711328)
chr3 (115-229)||(42896140-42896254)
chr3 (139-229)||(32711224-32711314)
chr3 (116-194)||(39964290-39964368)
chr3 (115-229)||(42896178-42896292)
chr3 (153-217)||(9141127-9141191)
chr3 (169-229)||(19674617-19674677)
chr3 (125-178)||(52667803-52667855)
chr3 (114-218)||(331841-331945)
chr3 (153-229)||(19649615-19649691)
chr3 (115-191)||(21150136-21150212)
chr3 (142-218)||(29290803-29290879)
chr3 (114-165)||(9170105-9170156)
chr3 (126-232)||(12744930-12745036)
chr3 (153-229)||(2544494-2544571)
chr3 (121-230)||(4980273-4980382)
chr3 (120-209)||(12744900-12744989)
chr3 (153-214)||(23223009-23223070)
chr3 (120-240)||(8439279-8439399)
chr3 (120-240)||(8504849-8504969)
chr3 (153-229)||(22528884-22528960)
chr3 (195-235)||(31836485-31836525)
chr3 (153-229)||(34308024-34308100)
chr3 (121-209)||(48191715-48191803)
chr3 (153-229)||(48593178-48593254)
[»] chr1 (16 HSPs)
chr1 (115-218)||(17468142-17468244)
chr1 (132-240)||(25554554-25554662)
chr1 (114-229)||(38834604-38834719)
chr1 (122-240)||(46508145-46508263)
chr1 (142-207)||(21945079-21945144)
chr1 (148-229)||(27732218-27732299)
chr1 (116-229)||(29043449-29043562)
chr1 (135-240)||(46508165-46508270)
chr1 (115-218)||(8352129-8352232)
chr1 (123-170)||(14577367-14577414)
chr1 (159-229)||(50155340-50155410)
chr1 (153-218)||(15285472-15285537)
chr1 (115-240)||(36040167-36040292)
chr1 (153-214)||(49944869-49944930)
chr1 (134-218)||(20273163-20273247)
chr1 (126-218)||(26468299-26468391)
[»] chr5 (14 HSPs)
chr5 (116-218)||(4409329-4409430)
chr5 (132-218)||(29486509-29486595)
chr5 (133-229)||(892583-892679)
chr5 (132-232)||(3100416-3100516)
chr5 (114-218)||(42364263-42364367)
chr5 (152-215)||(919692-919755)
chr5 (120-271)||(13391530-13391677)
chr5 (139-229)||(25408561-25408651)
chr5 (126-207)||(1420715-1420796)
chr5 (123-252)||(1899462-1899591)
chr5 (134-171)||(30046397-30046434)
chr5 (121-209)||(32911469-32911558)
chr5 (120-240)||(5259406-5259526)
chr5 (153-229)||(10495243-10495319)
[»] scaffold0531 (1 HSPs)
scaffold0531 (121-218)||(6897-6994)
[»] chr2 (19 HSPs)
chr2 (115-270)||(20218541-20218692)
chr2 (148-229)||(43542945-43543026)
chr2 (115-240)||(44587637-44587762)
chr2 (116-225)||(28936047-28936152)
chr2 (153-215)||(9152429-9152491)
chr2 (153-227)||(45651016-45651090)
chr2 (116-229)||(20218541-20218654)
chr2 (132-229)||(41824272-41824368)
chr2 (142-218)||(15969489-15969565)
chr2 (122-261)||(23738320-23738456)
chr2 (126-182)||(36129232-36129288)
chr2 (126-200)||(21488088-21488162)
chr2 (116-229)||(27964316-27964426)
chr2 (154-240)||(30429090-30429175)
chr2 (157-222)||(9002456-9002521)
chr2 (153-214)||(41153162-41153223)
chr2 (153-229)||(17866212-17866288)
chr2 (120-172)||(38227198-38227250)
chr2 (153-229)||(41153147-41153223)
[»] chr7 (17 HSPs)
chr7 (153-229)||(40364616-40364692)
chr7 (122-229)||(35436258-35436365)
chr7 (144-242)||(40361997-40362095)
chr7 (128-240)||(35436231-35436345)
chr7 (153-229)||(39153323-39153399)
chr7 (114-177)||(34840607-34840670)
chr7 (116-171)||(38940215-38940270)
chr7 (148-229)||(27163197-27163278)
chr7 (116-171)||(2456671-2456726)
chr7 (132-215)||(28228999-28229082)
chr7 (126-240)||(3967726-3967840)
chr7 (115-240)||(34275212-34275338)
chr7 (132-229)||(8169129-8169225)
chr7 (126-231)||(23797353-23797458)
chr7 (153-229)||(2399988-2400064)
chr7 (114-218)||(4132430-4132534)
chr7 (153-229)||(40800069-40800145)
[»] chr8 (24 HSPs)
chr8 (153-240)||(6189655-6189742)
chr8 (153-230)||(8793754-8793831)
chr8 (122-218)||(27789326-27789422)
chr8 (120-207)||(32272678-32272763)
chr8 (141-240)||(11295685-11295784)
chr8 (114-240)||(17871784-17871910)
chr8 (120-229)||(13964418-13964527)
chr8 (128-180)||(11258467-11258519)
chr8 (153-229)||(29358647-29358723)
chr8 (122-209)||(5888337-5888424)
chr8 (163-225)||(8818696-8818758)
chr8 (125-239)||(13080110-13080224)
chr8 (116-271)||(17871758-17871909)
chr8 (153-214)||(3236366-3236427)
chr8 (155-240)||(12736376-12736461)
chr8 (115-240)||(13496456-13496581)
chr8 (153-218)||(27789315-27789380)
chr8 (115-240)||(31505032-31505157)
chr8 (115-227)||(9420585-9420697)
chr8 (120-240)||(10934602-10934722)
chr8 (113-209)||(24287777-24287873)
chr8 (187-243)||(26229642-26229698)
chr8 (120-240)||(28882663-28882783)
chr8 (153-229)||(41177990-41178066)
[»] chr6 (17 HSPs)
chr6 (121-218)||(8029509-8029606)
chr6 (114-271)||(3203664-3203817)
chr6 (120-240)||(6560678-6560798)
chr6 (153-229)||(6686851-6686927)
chr6 (160-229)||(24985975-24986044)
chr6 (114-230)||(6032997-6033113)
chr6 (153-229)||(7649835-7649911)
chr6 (139-229)||(3012392-3012482)
chr6 (164-218)||(7384778-7384832)
chr6 (202-259)||(24089702-24089757)
chr6 (153-218)||(1158281-1158346)
chr6 (128-209)||(13506886-13506966)
chr6 (140-229)||(20703436-20703525)
chr6 (148-229)||(33122887-33122968)
chr6 (158-218)||(8920490-8920550)
chr6 (120-232)||(28554976-28555088)
chr6 (120-240)||(31398247-31398367)
[»] scaffold0002 (1 HSPs)
scaffold0002 (152-229)||(423283-423360)
[»] scaffold0025 (1 HSPs)
scaffold0025 (153-229)||(65986-66062)
[»] scaffold0756 (1 HSPs)
scaffold0756 (153-229)||(3550-3626)
[»] scaffold0542 (1 HSPs)
scaffold0542 (153-229)||(3446-3522)
[»] scaffold0006 (1 HSPs)
scaffold0006 (130-182)||(46799-46851)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 329
Target Start/End: Complemental strand, 22235506 - 22235192
Alignment:
Q  15 gacatcacaaatcattaaccgtccgcttaacacaactaactaggattttgaactgcataaccactgttgaggggatggttaatgagttgtgatatctgtt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22235506 gacatcacaaatcattaaccgtccgcttaacacaactaactaggattttgaactgcataaccactgttgaggggatggttaatgagttgtgatatctgtt 22235407  T
Q  115 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 214  Q
    |||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |||||||||    
T  22235406 atactccctccggtcactattataagcaaaaaatcacattttagattcattgaataactgatgtatctggtttatattaaagatcaaatatatcaattat 22235307  T
Q  215 tcaaagaacctaaaatgttgttttttctttgcttataacagtgactgcagggagtattcattaaccatctactgaaagtagttaatcaaataattttgat 314  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22235306 tcaaagaacctaaaaagttgttttttctttgcttataacagtgactgcagggagtattcattaaccatctactgaaagtagttaatcaaataattttgat 22235207  T
Q  315 gtcaaattgtgtgtc 329  Q
    |||||||||||||||    
T  22235206 gtcaaattgtgtgtc 22235192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 5535706 - 5535819
Alignment:
Q  113 ttatactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatt 212  Q
    |||||||||||||| ||| || ||| |||||||| |||  ||||||||||||| ||||| ||||| || ||||||||| || |||||| |||||||| ||    
T  5535706 ttatactccctctgatcactagtataagcaaaaactcattttttagattcattcaataaatgatgtatgtagtttata-tatagaccacatacatcagtt 5535804  T
Q  213 attcaaagaacctaa 227  Q
    ||| || ||||||||    
T  5535805 attgaatgaacctaa 5535819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 46462407 - 46462488
Alignment:
Q  148 tcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||| ||||||||||||| ||||| ||||| || | ||||||| ||||||| | |||||||| |||||||| ||||||||||    
T  46462407 tcactttttagattcattaaataaatgatgtatatggtttataataaagactacatacatcatttattcaatgaacctaaaa 46462488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 32645628 - 32645532
Alignment:
Q  127 gtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaac 223  Q
    ||||||||||| |||||||||| |  ||||||||||||||||||| ||||| || | ||  |||| | |||| |||||||||| |||||||| ||||    
T  32645628 gtcattattataagcaaaaaataatgttttagattcattgaataattgatgtatttggtcaatataatagactaaatacatcagttattcaatgaac 32645532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 56328591 - 56328471
Alignment:
Q  120 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaa 219  Q
    ||||| ||||| || ||| |||||||||  |||||||||||||||| | | | |||||||| |||| | ||||| |||||| |||||||| | | | ||     
T  56328591 ccctccggtcactaatataagcaaaaaactacattttagattcattcatttaatgatgcatatagtctttattatagaccacatacatcattaaatgaat 56328492  T
Q  220 gaacctaaaatgttgtttttt 240  Q
    ||||||||||||| |||||||    
T  56328491 gaacctaaaatgtagtttttt 56328471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 26165941 - 26166008
Alignment:
Q  160 ttcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaa 227  Q
    |||||||||||||| ||| || | |||||||||| ||||||||||||| | |||||||| ||||||||    
T  26165941 ttcattgaataacttatgtatattgtttatattatagaccaaatacattagttattcaatgaacctaa 26166008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 52072874 - 52072799
Alignment:
Q  142 aaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattca 217  Q
    |||||||||| ||||||||| ||||||||||||||| ||||| |||||| || | |  | ||||||||||||||||    
T  52072874 aaaaaatcactttttagattaattgaataactgatgtatctaatttataatatatattagatacatcaattattca 52072799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 26066486 - 26066416
Alignment:
Q  148 tcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 218  Q
    |||| ||||||||||||| ||||||||||| |||| || ||||||  |||||  |||||||||||||||||    
T  26066486 tcactttttagattcattaaataactgatgtatctggtctatattctagaccggatacatcaattattcaa 26066416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 22020110 - 22020171
Alignment:
Q  115 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgat 176  Q
    |||||||||||||||| |||||| |||||||  |||| ||||||||||||| ||||| ||||    
T  22020110 atactccctctggtcactattataagcaaaagttcactttttagattcattcaataaatgat 22020171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 32645533 - 32645602
Alignment:
Q  160 ttcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||||||||||||||||| || |||| |||  ||  ||||||||||||||||||||||| ||| ||||||    
T  32645533 ttcattgaataactgatgtatttagtctattatattgaccaaatacatcaattattcaatgaatctaaaa 32645602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 27537056 - 27537100
Alignment:
Q  121 cctctggtcattattatgagcaaaaaatcacattttagattcatt 165  Q
    ||||||||||||||||| |||||||| | ||||||||||||||||    
T  27537056 cctctggtcattattataagcaaaaatttacattttagattcatt 27537100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 38381976 - 38382064
Alignment:
Q  121 cctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatca 209  Q
    |||| ||||| |||||| |||||||| | |||||||||||||||||| ||| ||||| || | ||||||| || |||| | ||||||||    
T  38381976 cctccggtcactattataagcaaaaatttacattttagattcattgattaaatgatgtatgtggtttataatacagactacatacatca 38382064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 39897103 - 39897170
Alignment:
Q  115 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatct 182  Q
    |||| |||||| |||| |||||  || |||||||||| |||||||||||||||||||| |||| ||||    
T  39897103 atacaccctctcgtcactattagaagtaaaaaatcactttttagattcattgaataaccgatgtatct 39897170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 30206576 - 30206526
Alignment:
Q  157 agattcattgaataactgatgcatctagtttatattaaagaccaaatacat 207  Q
    ||||||||||||||| ||||| |||| ||||||| || |||||||||||||    
T  30206576 agattcattgaataattgatgtatctggtttataatatagaccaaatacat 30206526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 30990630 - 30990684
Alignment:
Q  159 attcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatta 213  Q
    ||||||||||||||| ||| ||||||||| || || |||| ||||||||||||||    
T  30990630 attcattgaataactaatgtatctagtttgtaatatagactaaatacatcaatta 30990684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 36491047 - 36491121
Alignment:
Q  143 aaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattca 217  Q
    ||||||||  ||||| ||||||||||||  ||||| |||||||||||||||  ||| | |||||||| |||||||    
T  36491047 aaaaatcattttttacattcattgaatatttgatgtatctagtttatattatcgactagatacatcagttattca 36491121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 46395613 - 46395679
Alignment:
Q  163 attgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    ||||||||||||||| ||||||||| ||||| | | ||||||||| | |||| ||| ||||||||||    
T  46395613 attgaataactgatgtatctagtttgtattataaatcaaatacattagttatgcaacgaacctaaaa 46395679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 11045674 - 11045755
Alignment:
Q  148 tcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||| |||||| |||||||||||||| ||  || |||| ||||||| |||||| | ||| || |||||||| ||||||||||    
T  11045674 tcactttttaggttcattgaataactaatatatttagtctatattatagaccacacacaccagttattcaatgaacctaaaa 11045755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 11047522 - 11047603
Alignment:
Q  148 tcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||| |||||| |||||||||||||| ||  || |||| ||||||| |||||| | ||| || |||||||| ||||||||||    
T  11047522 tcactttttaggttcattgaataactaatatatttagtctatattatagaccacacacaccagttattcaatgaacctaaaa 11047603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 1140977 - 1140901
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    ||||||||||||||  ||| ||||| |||| || |||||| |  || ||||||||||||||||||| ||| ||||||    
T  1140977 ttttagattcattgtgtaagtgatgtatctggtctatatttataacaaaatacatcaattattcaatgaatctaaaa 1140901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 2865103 - 2865015
Alignment:
Q  126 ggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 214  Q
    |||||||||||| | |||||| | |||||||||||| ||| | ||| ||||| || |||||| ||||| ||| || |||||||| ||||    
T  2865103 ggtcattattataaacaaaaattaacattttagattaattcattaaatgatgtatatagtttttattatagatcatatacatcatttat 2865015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 21142119 - 21142199
Alignment:
Q  150 acattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaat 230  Q
    |||||||||||||||  | ||| ||||| || ||||||||| ||||||||| |||||||| | ||| || ||| |||||||    
T  21142119 acattttagattcatgcattaaatgatgtatttagtttataataaagaccatatacatcattaattaaatgaatctaaaat 21142199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 31089994 - 31089918
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    ||||||||||||||||||| ||||| || | || |||||||| |  || |||||||| | |||||| ||||||||||    
T  31089994 ttttagattcattgaataaatgatgtatgtggtctatattaatggtcacatacatcactcattcaatgaacctaaaa 31089918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 54713090 - 54713142
Alignment:
Q  113 ttatactccctctggtcattattatgagcaaaaaatcacattttagattcatt 165  Q
    |||||| ||||| ||||| |||||| |||||||| | ||||||||||||||||    
T  54713090 ttatacaccctccggtcactattataagcaaaaatttacattttagattcatt 54713142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 32711328 - 32711238
Alignment:
Q  139 agcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    ||||||||||||| ||||||||||||||||||| ||||| |||| || |||| || || ||||||||||||||||||||| ||||||||||    
T  32711328 agcaaaaaatcactttttagattcattgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatgaacctaaaa 32711238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 42896140 - 42896254
Alignment:
Q  115 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 214  Q
    |||||||||| |||| ||||||| || |  || |||| |||||| |||||||||||||||||| |||| || |||| ||| ||||| |||||||| ||||    
T  42896140 atactccctccggtctttattataagaagcaattcactttttaggttcattgaataactgatgtatctggtctataataaggaccatatacatcagttat 42896239  T
Q  215 tcaaagaacctaaaa 229  Q
    |||| |||| |||||    
T  42896240 tcaatgaacgtaaaa 42896254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 32711224 - 32711314
Alignment:
Q  139 agcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||||||| |||| |||||| |||||||||||| ||||| || | |  ||||||| |||||| ||||||||||||||||| ||| ||||||    
T  32711224 agcaaaaagtcactttttaggttcattgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaatctaaaa 32711314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 39964290 - 39964368
Alignment:
Q  116 tactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaa 194  Q
    ||||||||| |||||||||||| |||||||||  || ||||||||||||||||||| | ||| || |||| ||||||||    
T  39964290 tactccctccggtcattattataagcaaaaaactactttttagattcattgaataaattatgtatgtagtctatattaa 39964368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 42896292 - 42896178
Alignment:
Q  115 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 214  Q
    ||||||| ||||||| ||||||| || || || |||| |||||  |||||||||||||||||| || | ||   ||||| |||||| |||||||| ||||    
T  42896292 atactccttctggtccttattataagaaacaattcactttttacgttcattgaataactgatgtatatggtccttattatagaccagatacatcagttat 42896193  T
Q  215 tcaaagaacctaaaa 229  Q
    |||| ||||||||||    
T  42896192 tcaatgaacctaaaa 42896178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 9141191 - 9141127
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattca 217  Q
    ||||||||||  ||||||||||||| |||| ||||||| || ||||||||||||||||| |||||    
T  9141191 ttttagattccctgaataactgatgaatctggtttataatatagaccaaatacatcaatcattca 9141127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 19674677 - 19674617
Alignment:
Q  169 taactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    ||||||||| |||| | |||||||| |||||||||||| ||||||||||| ||||||||||    
T  19674677 taactgatgtatctgggttatattatagaccaaatacaacaattattcaatgaacctaaaa 19674617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 52667803 - 52667855
Alignment:
Q  125 tggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgc 178  Q
    |||||| |||||||||||||||||||| ||||||||||||| || |||||||||    
T  52667803 tggtcactattatgagcaaaaaatcac-ttttagattcattaaacaactgatgc 52667855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 331945 - 331841
Alignment:
Q  114 tatactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatta 213  Q
    ||||| ||||| ||||| |||||| |||||||| | |||||||||||||||| | ||| ||||| || || | | ||||| |||||| |||||||| |||    
T  331945 tatacaccctccggtcactattataagcaaaaattaacattttagattcattcattaaatgatgtatataatctttattatagaccacatacatcattta 331846  T
Q  214 ttcaa 218  Q
     ||||    
T  331845 atcaa 331841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 19649615 - 19649691
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||| |||||||||||||| ||||| || |||| ||||||  ||||| ||||||||||||| |||| ||| ||||||    
T  19649615 tttttgattcattgaataattgatgtatttagtctatattttagaccgaatacatcaattactcaatgaatctaaaa 19649691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 21150136 - 21150212
Alignment:
Q  115 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatat 191  Q
    ||||||||||| |||||  ||||  ||||||||| || ||||||||||||| ||||||| ||| ||||| |||||||    
T  21150136 atactccctctagtcatatttatatgcaaaaaataactttttagattcattaaataactaatgtatctaatttatat 21150212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 29290803 - 29290879
Alignment:
Q  142 aaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 218  Q
    ||||| |||| |||||||||||||||| |||||||| ||||  | ||||||| |||| |||||||| | ||||||||    
T  29290803 aaaaattcactttttagattcattgaacaactgatgtatctgatctatattatagactaaatacataagttattcaa 29290879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 9170105 - 9170156
Alignment:
Q  114 tatactccctctggtcattattatgagcaaaaaatcacattttagattcatt 165  Q
    ||||| ||||| ||||| |||||| |||||||||| ||||||||||||||||    
T  9170105 tatacaccctccggtcactattataagcaaaaaattacattttagattcatt 9170156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 232
Target Start/End: Complemental strand, 12745036 - 12744930
Alignment:
Q  126 ggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacct 225  Q
    ||||| |||||| |||||||| | ||||||||||| |||| | ||| ||||| || | || |||| ||||||||| |||||||| | ||| || ||| ||    
T  12745036 ggtcactattataagcaaaaattaacattttagatacattcattaaatgatgtatgtggtctataataaagaccatatacatcattaattgaatgaatct 12744937  T
Q  226 aaaatgt 232  Q
    |||||||    
T  12744936 aaaatgt 12744930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 2544494 - 2544571
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtt-tatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||||| |||||||||||| ||||| |||| ||| || |||| ||||||||||||||| |||| ||| ||| ||||||    
T  2544494 ttttaggttcattgaataattgatgtatcttgttataaattatagaccaaatacatcacttatacaatgaatctaaaa 2544571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 4980273 - 4980382
Alignment:
Q  121 cctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaag 220  Q
    ||||| ||||| | ||| |||||||| ||| |||||||||||||| ||||| ||||  || | || |||| ||||||| | |||||||| ||||| || |    
T  4980273 cctctagtcataaatataagcaaaaattcatattttagattcattcaataaatgatatatgttgtctataataaagactacatacatcatttattgaatg 4980372  T
Q  221 aacctaaaat 230  Q
    || |||||||    
T  4980373 aatctaaaat 4980382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 12744900 - 12744989
Alignment:
Q  120 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatca 209  Q
    ||||| ||||| |||||| |||||||| | |||||||||||||||| ||| | ||||| || | || | ||||| |||||| ||||||||    
T  12744900 ccctccggtcactattataagcaaaaacttacattttagattcattcaattaatgatgtatatggtctttattatagaccacatacatca 12744989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 23223070 - 23223009
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 214  Q
    ||||||||||||||| ||||||||| |||| || || | || ||||||||||||||| ||||    
T  23223070 ttttagattcattgagtaactgatgtatcttgtctaaaatatagaccaaatacatcatttat 23223009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 8439399 - 8439279
Alignment:
Q  120 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaa 219  Q
    ||||| ||||| || ||| |||||||||| | ||||||| |||||| | | | |||||||  |||| | ||||| |||||| |||||||| | | | ||     
T  8439399 ccctccggtcactaatataagcaaaaaattatattttaggttcattcatttaatgatgcacatagtctttattatagaccacatacatcattaaatgaat 8439300  T
Q  220 gaacctaaaatgttgtttttt 240  Q
    ||||||||||||| |||||||    
T  8439299 gaacctaaaatgtagtttttt 8439279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 8504849 - 8504969
Alignment:
Q  120 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaa 219  Q
    ||||| ||||| |||||| ||||||||   |||||||||||||||| | | | |||||||  | || | ||||| |||||| |||||||| | | | ||     
T  8504849 ccctccggtcactattataagcaaaaatctacattttagattcattcatttattgatgcacatggtctttattatagaccacatacatcattaaataaat 8504948  T
Q  220 gaacctaaaatgttgtttttt 240  Q
    ||||||||||||| |||||||    
T  8504949 gaacctaaaatgtagtttttt 8504969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 22528960 - 22528884
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    ||||||||||||| ||| | ||||| || | |||||||||| |||||| |||||||| | ||| || ||||||||||    
T  22528960 ttttagattcattcaatcaatgatgtatgtggtttatattatagaccacatacatcattgattgaatgaacctaaaa 22528884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 31836485 - 31836525
Alignment:
Q  195 agaccaaatacatcaattattcaaagaacctaaaatgttgt 235  Q
    ||||||||||||| |||||||||| |||||||||| |||||    
T  31836485 agaccaaatacattaattattcaatgaacctaaaaagttgt 31836525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 34308024 - 34308100
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||||| |||||||||||| ||||  || |||||||||||| || |||||| ||| ||| ||| || ||||||||||    
T  34308024 ttttaggttcattgaataaatgatatatttagtttatattatagtccaaattcattaataatttaatgaacctaaaa 34308100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 48191715 - 48191803
Alignment:
Q  121 cctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatca 209  Q
    |||| ||||| |||||| | |||||| | |||||||||||||||| | ||| ||||| || | ||||||| ||||||| | ||||||||    
T  48191715 cctccggtcactattataaacaaaaattaacattttagattcattcattaaatgatgtatgtggtttataataaagactacatacatca 48191803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 48593178 - 48593254
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||||||| |||||||||| ||||| |||  || || | || ||||||||||||| |||||||||| ||| ||||||    
T  48593178 ttttagatacattgaataattgatgtatcgggtctagaatatagaccaaatacataaattattcaatgaatctaaaa 48593254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 17468244 - 17468142
Alignment:
Q  115 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 214  Q
    |||||||||||||||| |||||  ||||||| | ||| ||||||||||||||||| ||||||| || |  ||| ||||| |||||||||| |||||||||    
T  17468244 atactccctctggtcactattaaaagcaaaataccactttttagattcattgaatcactgatgtat-tgatttctattatagaccaaatatatcaattat 17468146  T
Q  215 tcaa 218  Q
    ||||    
T  17468145 tcaa 17468142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 25554554 - 25554662
Alignment:
Q  132 tattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaatg 231  Q
    |||||| |||||||||| || ||||||||||||||||||| ||||| || |  | |||| || || |||||||||||| ||||| || || ||||||| |    
T  25554554 tattataagcaaaaaataactttttagattcattgaataaatgatgtatgtgatatatactataggccaaatacatcagttatttaatgagcctaaaaag 25554653  T
Q  232 ttgtttttt 240  Q
    |||||||||    
T  25554654 ttgtttttt 25554662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 38834604 - 38834719
Alignment:
Q  114 tatactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatta 213  Q
    ||||||||||| ||||| |||||| |||||||| | |  ||||||||||||| ||||| ||||| || |||| ||||| || ||||| |||||||| |||    
T  38834604 tatactccctccggtcactattataagcaaaaatttattttttagattcattaaataaatgatgtatatagtctatataaatgaccatatacatcattta 38834703  T
Q  214 ttcaaagaacctaaaa 229  Q
    || || ||| ||||||    
T  38834704 ttgaatgaatctaaaa 38834719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 46508145 - 46508263
Alignment:
Q  122 ctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaaga 221  Q
    |||| ||| ||||||| |||||||||  || ||| ||||||||||||||||| ||| |||| ||  ||| ||||||| | || ||||||||||||||  |    
T  46508145 ctctagtccttattataagcaaaaaaaaacttttcagattcattgaataacttatgtatctggtcaataataaagacaagatgcatcaattattcaatta 46508244  T
Q  222 acctaaaatgttgtttttt 240  Q
    |||||||| || |||||||    
T  46508245 acctaaaaagtggtttttt 46508263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 21945079 - 21945144
Alignment:
Q  142 aaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacat 207  Q
    |||||||||| |||||||||||||||||| || ||| || | || ||||||| |||||||||||||    
T  21945079 aaaaaatcactttttagattcattgaatacctaatgtatttggtatatattatagaccaaatacat 21945144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 27732299 - 27732218
Alignment:
Q  148 tcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||| |||||| |||||||||||| |||||||| | || ||||| | |||||  |||||||| |||||||| ||||||||||    
T  27732299 tcactttttaggttcattgaataaatgatgcatgttgtatatatcatagaccgcatacatcatttattcaatgaacctaaaa 27732218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 29043449 - 29043562
Alignment:
Q  116 tactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattatt 215  Q
    ||||||||| | |||||||||| ||||||||   || |||||| |||||| ||||| ||| | || |||| ||||||   |||||||||||||| |||||    
T  29043449 tactccctccgctcattattataagcaaaaatcaactttttaggttcattcaataaatgacgtatttagtctatatttttgaccaaatacatcatttatt 29043548  T
Q  216 caaagaacctaaaa 229  Q
     || ||||||||||    
T  29043549 gaatgaacctaaaa 29043562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 46508270 - 46508165
Alignment:
Q  135 tatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaatgttg 234  Q
    ||||||||||||| ||| |||||| || ||||||||| |||||||||| || | |||||  ||||| |||||| | |||||||| ||| || ||| |||     
T  46508270 tatgagcaaaaaaccactttttaggttaattgaataattgatgcatcttgtctttattattgaccagatacataagttattcaatgaatctgaaaagttt 46508171  T
Q  235 tttttt 240  Q
    ||||||    
T  46508170 tttttt 46508165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 8352129 - 8352232
Alignment:
Q  115 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 214  Q
    |||||||||||||||| |||||| |||||||  |||  |||||||| |||||||| | | ||| ||||| | | ||||| |||  |||||||| ||||||    
T  8352129 atactccctctggtcactattataagcaaaacttcattttttagatacattgaatgattaatgtatctaatatttattatagaataaatacattaattat 8352228  T
Q  215 tcaa 218  Q
    ||||    
T  8352229 tcaa 8352232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 14577414 - 14577367
Alignment:
Q  123 tctggtcattattatgagcaaaaaatcacattttagattcattgaata 170  Q
    |||||||| | |||| ||||||||| ||||||||||||||||||||||    
T  14577414 tctggtcactgttataagcaaaaaagcacattttagattcattgaata 14577367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 50155340 - 50155410
Alignment:
Q  159 attcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||||||| |||| ||||| || | || ||||||| ||||||||||||||||||| |||| ||| ||||||    
T  50155340 attcattgcataaatgatgtatttggtctatattatagaccaaatacatcaattactcaatgaatctaaaa 50155410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 15285472 - 15285537
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 218  Q
    ||||||||| ||||||||| ||||| ||||  |  ||||| |||| ||||||||||||||||||||    
T  15285472 ttttagatttattgaataattgatgtatctgatccatattcaagatcaaatacatcaattattcaa 15285537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 240
Target Start/End: Complemental strand, 36040292 - 36040167
Alignment:
Q  115 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 214  Q
    |||| ||||| ||||| || ||| |||||||||  ||||||||| |||||| | | | |||||||  |||| | ||||| |||||| |||||||| | |     
T  36040292 atacaccctccggtcactaatataagcaaaaaactacattttaggttcattcatttaatgatgcacatagtctttattatagaccacatacatcattaaa 36040193  T
Q  215 tcaaagaacctaaaatgttgtttttt 240  Q
    | || ||||||||||||| |||||||    
T  36040192 tgaatgaacctaaaatgtagtttttt 36040167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 49944869 - 49944930
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 214  Q
    ||||||||||||||||||| ||||| |||| || || | || ||||||||||||||| ||||    
T  49944869 ttttagattcattgaataattgatgtatcttgtctagaatatagaccaaatacatcatttat 49944930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 20273247 - 20273163
Alignment:
Q  134 ttatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 218  Q
    |||| |||||||||  || ||||  ||||||||||||| ||||| ||| ||| |||| || |||||| |||||||||||| ||||    
T  20273247 ttataagcaaaaaacaacttttttaattcattgaataaatgatgtatccagtctataatatagaccagatacatcaattactcaa 20273163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 26468299 - 26468391
Alignment:
Q  126 ggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 218  Q
    ||||| |||||| | |||||  |||| ||||| || |||||||||| | ||| ||||| ||| ||||| |||||| ||| |||||||||||||    
T  26468299 ggtcactattataaacaaaatttcactttttaaatacattgaataattaatgtatctaatttttattatagaccatatatatcaattattcaa 26468391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 4409329 - 4409430
Alignment:
Q  116 tactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattatt 215  Q
    |||| |||||||| |||| ||| |||||||| | |||||||||| | ||||||| | ||||| || |||| ||||||| |||||||||||||||||||||    
T  4409329 tacttcctctggtgattactataagcaaaaact-acattttagactaattgaattattgatgtatttagtctatattatagaccaaatacatcaattatt 4409427  T
Q  216 caa 218  Q
    |||    
T  4409428 caa 4409430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 29486509 - 29486595
Alignment:
Q  132 tattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 218  Q
    |||||| |||||||  ||||||||||||| |||||||||| | ||| |||||||||||  ||||||| ||||| || ||||||||||    
T  29486509 tattataagcaaaatttcacattttagatacattgaataattaatgtatctagtttatgataaagactaaatatattaattattcaa 29486595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 892679 - 892583
Alignment:
Q  133 attatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    ||||| |||||||| | || ||| | |||||||||||||| |||| ||||||| |||| || ||| ||||||||| |||||||||| ||| ||||||    
T  892679 attataagcaaaaatttacttttaaaattcattgaataacggatgtatctagtatatagtatagaacaaatacattaattattcaatgaatctaaaa 892583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 132 - 232
Target Start/End: Original strand, 3100416 - 3100516
Alignment:
Q  132 tattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaatg 231  Q
    |||||| |||||||| | |||||||||||||||| ||||| ||||| || |||| |||| |||||| || |||||||| | ||| || ||| ||||||||    
T  3100416 tattataagcaaaaattaacattttagattcattcaataaatgatgtatgtagtctataataaagatcatatacatcattaattgaatgaatctaaaatg 3100515  T
Q  232 t 232  Q
    |    
T  3100516 t 3100516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 42364367 - 42364263
Alignment:
Q  114 tatactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatta 213  Q
    |||||||| || ||||| |||||| |||||||  |||| |||||||| |||||||||| |   | |||||||||||| ||||||| | |||||| |||||    
T  42364367 tatactccttccggtcactattataagcaaaacttcactttttagatacattgaataattagggtatctagtttataataaagactacatacattaatta 42364268  T
Q  214 ttcaa 218  Q
    |||||    
T  42364267 ttcaa 42364263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 919755 - 919692
Alignment:
Q  152 attttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattatt 215  Q
    |||||||||||||||| ||| ||||| ||||||| || | || ||||||||||||||| |||||    
T  919755 attttagattcattgagtaattgatgtatctagtatagaatatagaccaaatacatcatttatt 919692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 271
Target Start/End: Original strand, 13391530 - 13391677
Alignment:
Q  120 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaa 219  Q
    ||||||||||| |||||| || ||||    || ||||||||||||| ||||| ||||| || | ||  ||| || |||| |||||||| | ||||| ||     
T  13391530 ccctctggtcactattataagtaaaagtcaactttttagattcattcaataaatgatgtatttggtcaataatatagactaaatacataatttattgaat 13391629  T
Q  220 gaacctaaaatgttgttttttctttgcttataacagtgactgcagggagtat 271  Q
    |||||||||| |||| ||    |||||||||||||||||| | |||||||||    
T  13391630 gaacctaaaaagttgatt----tttgcttataacagtgacaggagggagtat 13391677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 25408561 - 25408651
Alignment:
Q  139 agcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||||||| ||| |||||||||||||| ||||| ||||| || | || || | ||||||||| |||||||| ||||| || ||| ||||||    
T  25408561 agcaaaaattcatattttagattcattcaataaatgatgtatgttgtctacaataaagaccacatacatcatttattgaatgaatctaaaa 25408651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 1420796 - 1420715
Alignment:
Q  126 ggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacat 207  Q
    ||||| |||||| || |||||||| ||||||| ||| ||| ||||| ||||| ||||  | ||||||| |||||||||||||    
T  1420796 ggtcactattataagaaaaaaatcgcattttaaatttatttaataattgatgtatcttatctatattatagaccaaatacat 1420715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 252
Target Start/End: Original strand, 1899462 - 1899591
Alignment:
Q  123 tctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaa 222  Q
    |||| ||| |||||| |||||| |  ||| |||||| ||||||||||||||  || |||| ||  |||||| ||| || |||||||| |||||||| |||    
T  1899462 tctgatcaatattataagcaaacacccactttttaggttcattgaataacttgtgtatctggtcaatattacagagcacatacatcagttattcaatgaa 1899561  T
Q  223 cctaaaatgttgttttttctttgcttataa 252  Q
    | ||||| ||  |||||| |||| ||||||    
T  1899562 cataaaaagtgattttttttttgtttataa 1899591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 30046434 - 30046397
Alignment:
Q  134 ttatgagcaaaaaatcacattttagattcattgaataa 171  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  30046434 ttataagcaaaaaatcacattttagatacattgaataa 30046397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 32911469 - 32911558
Alignment:
Q  121 cctctggtcattattatgagcaaaaaatc-acattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatca 209  Q
    ||||| ||||||||||| ||||||||||| || |||||| |||||| | ||| ||||| || |||| |||| || |||| ||||||||||    
T  32911469 cctcttgtcattattataagcaaaaaatcaactttttaggttcatttattaaatgatgtatttagtctataatatagactaaatacatca 32911558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 5259526 - 5259406
Alignment:
Q  120 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaa 219  Q
    ||||| ||||| || ||| |||||||||  |||||||||||||||| | | | |||||||  |||| | ||||| |||||| |||||||| | | | ||     
T  5259526 ccctccggtcactaatataagcaaaaaactacattttagattcattcatttaatgatgcacatagtctttattatagaccacatacatcattaaatgaat 5259427  T
Q  220 gaacctaaaatgttgtttttt 240  Q
    ||||||||||| | |||||||    
T  5259426 gaacctaaaatatagtttttt 5259406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 10495243 - 10495319
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    ||||||||||||| ||||| ||||| || | |||||||||| ||| || || ||||| |||||||| |||| |||||    
T  10495243 ttttagattcattcaataaatgatgtatgtggtttatattatagatcacattcatcatttattcaatgaacttaaaa 10495319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 6994 - 6897
Alignment:
Q  121 cctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 218  Q
    |||| |||||||||||| ||||| ||||||||||||| ||||||||||||| ||||| || |||  |||||   ||| ||||||||| ||||||||||    
T  6994 cctccggtcattattataagcaacaaatcacattttaaattcattgaataaatgatgtatttagactatatattagatcaaatacatgaattattcaa 6897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 115 - 270
Target Start/End: Complemental strand, 20218692 - 20218541
Alignment:
Q  115 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 214  Q
    ||||||||||  |||| |||||| ||||| ||||||| ||||||||||||||||||| ||||| ||| ||| |||| ||  |||   |||||||  ||||    
T  20218692 atactccctcctgtcactattataagcaagaaatcactttttagattcattgaataattgatgtatccagtctataatactgactgcatacatcggttat 20218593  T
Q  215 tcaaagaacctaaaatgttgttttttctttgcttataacagtgactgcagggagta 270  Q
    |||| ||| |||||| | ||||||   ||||||||||| |||||||| ||||||||    
T  20218592 tcaatgaaactaaaaag-tgtttt---tttgcttataatagtgactggagggagta 20218541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 43542945 - 43543026
Alignment:
Q  148 tcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||||||  || | |||||||| ||||| || ||||||||||    
T  43542945 tcactttttagattcattcaataaatgatgcatctagtttatattaagaacgagatacatcatttattgaatgaacctaaaa 43543026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 44587637 - 44587762
Alignment:
Q  115 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 214  Q
    |||||||||| |||||||||||| ||||||| |  |  |||||| |||||||||||| ||||| || | || |||||| | ||||| |||||||| | ||    
T  44587637 atactccctccggtcattattataagcaaaatactattttttaggttcattgaataaatgatgtatgtggtctatattgatgaccacatacatcactcat 44587736  T
Q  215 tcaaagaacctaaaatgttgtttttt 240  Q
    |||| ||| |||||| || |||||||    
T  44587737 tcaatgaatctaaaaagtagtttttt 44587762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 116 - 225
Target Start/End: Complemental strand, 28936152 - 28936047
Alignment:
Q  116 tactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattatt 215  Q
    |||| |||| ||||| |||| | ||||||||||||| ||| || |||||||| |||||||||    ||||||||| || |||||||| |||||| |||||    
T  28936152 tacttcctccggtcactattttaagcaaaaaatcacttttaaggttcattgagtaactgatg----tagtttataatatagaccaaacacatcagttatt 28936057  T
Q  216 caaagaacct 225  Q
    ||| ||||||    
T  28936056 caatgaacct 28936047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 9152491 - 9152429
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattatt 215  Q
    ||||||||||||||| ||| ||||| ||||||| || | || |||||||||||||||||||||    
T  9152491 ttttagattcattgagtaattgatgtatctagtctaaaatatagaccaaatacatcaattatt 9152429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 45651016 - 45651090
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaa 227  Q
    |||||| || ||||||||||||||| ||||  | |||| || |||||| ||||||||||||||||||||| ||||    
T  45651016 ttttaggtttattgaataactgatgaatctgttctataatatagaccagatacatcaattattcaaagaatctaa 45651090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 20218541 - 20218654
Alignment:
Q  116 tactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattatt 215  Q
    |||||||||  |||| |||||| ||||||||| ||| |||||| ||||||||||||| |||| ||  |||   ||||| ||||   ||||||||||||||    
T  20218541 tactccctccagtcactattataagcaaaaaaacactttttagtttcattgaataaccgatgtatgcagtcagtattatagactggatacatcaattatt 20218640  T
Q  216 caaagaacctaaaa 229  Q
    ||| ||| ||||||    
T  20218641 caatgaatctaaaa 20218654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 41824272 - 41824368
Alignment:
Q  132 tattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||||| |||||||| |||  ||||||||||||| ||||| | ||| || ||||||||| || |||||| |||||||| ||||| || ||||||||||    
T  41824272 tattataagcaaaaattcattttttagattcattcaataaattatgtatgtagtttata-tatagaccacatacatcatttattgaatgaacctaaaa 41824368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 15969565 - 15969489
Alignment:
Q  142 aaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 218  Q
    |||||||||  ||||| ||| ||||||||| |||||||||||||| |||||| | || | |||||||| ||||||||    
T  15969565 aaaaaatcattttttatattaattgaataattgatgcatctagttaatattataaactatatacatcagttattcaa 15969489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 261
Target Start/End: Original strand, 23738320 - 23738456
Alignment:
Q  122 ctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaaga 221  Q
    ||||||||| |||||| || ||||| | |||||||||||||||| ||||| |||||| | |||| | || || |||||  |||||||| ||||| ||  |    
T  23738320 ctctggtcactattataagtaaaaattgacattttagattcatttaataaatgatgc-tatagtctttaatatagaccgcatacatcatttattgaataa 23738418  T
Q  222 acctaaaatgttgttttttctttgcttataacagtgactg 261  Q
    ||||||||||||   |||  ||||||||||| ||||||||    
T  23738419 acctaaaatgttaaattt--tttgcttataatagtgactg 23738456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 36129288 - 36129232
Alignment:
Q  126 ggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatct 182  Q
    |||||||||||| ||||||||  ||| ||||| ||||||||||||| ||||||||||    
T  36129288 ggtcattattataagcaaaaatacactttttaaattcattgaataattgatgcatct 36129232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 21488162 - 21488088
Alignment:
Q  126 ggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagacca 200  Q
    |||||||| ||| |||||||||| |||||||||||||||| | | | ||||| || | ||||||| |||||||||    
T  21488162 ggtcattaatataagcaaaaaattacattttagattcattcatttaatgatgtatgtggtttataataaagacca 21488088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 27964426 - 27964316
Alignment:
Q  116 tactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattatt 215  Q
    ||||||||| ||||| |||||| | ||||||||||  ||||||||||||| ||||| ||||| ||||||   ||| || |||||| |||||| | |||||    
T  27964426 tactccctccggtcactattataaacaaaaaatca--ttttagattcatttaataaatgatgtatctagaccata-tatagaccacatacataatttatt 27964330  T
Q  216 caaagaacctaaaa 229  Q
     || ||||||||||    
T  27964329 gaatgaacctaaaa 27964316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 30429175 - 30429090
Alignment:
Q  154 tttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaatgttgtttttt 240  Q
    ||||| || ||||||||||| ||| ||||||| |||| |||||  || |||||| ||||||| || |||||||||| ||||||||||    
T  30429175 tttaggtttattgaataactaatgtatctagtctata-taaaggtcagatacattaattattgaatgaacctaaaaagttgtttttt 30429090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 9002456 - 9002521
Alignment:
Q  157 agattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaa 222  Q
    ||||||||||||||||| ||| || |  | |||| || |||||||||| |||||||||||||||||    
T  9002456 agattcattgaataacttatgtatttgatatataatatagaccaaatatatcaattattcaaagaa 9002521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 41153223 - 41153162
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 214  Q
    ||||||||||||||| ||| ||||| || | ||||||| || ||||||||||||||| ||||    
T  41153223 ttttagattcattgagtaattgatgtatttggtttataatatagaccaaatacatcatttat 41153162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 17866288 - 17866212
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    ||||||||||||| ||||| | ||| || | ||||| | ||||||||| |||||||| ||||| || ||||||||||    
T  17866288 ttttagattcattcaataaattatgtatgttgtttacaataaagaccacatacatcatttattaaatgaacctaaaa 17866212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 38227198 - 38227250
Alignment:
Q  120 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataac 172  Q
    ||||| |||||||||||| ||||||||| ||| ||||||||| ||| ||||||    
T  38227198 ccctccggtcattattataagcaaaaaaccactttttagattaatttaataac 38227250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 41153147 - 41153223
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||| ||||||||| |||| ||||| || | || ||||||| | ||||||||||||||||| |||| ||| ||||||    
T  41153147 tttttgattcattgcataaatgatgtatttggtctatattataaaccaaatacatcaattactcaatgaatctaaaa 41153223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 40364616 - 40364692
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||||||||||||||| |||||||  || | |||||||||| ||| ||||||||||||||||||||  |||||||||    
T  40364616 ttttagattcattgaaaaactgatatatttggtttatattatagatcaaatacatcaattattcaattaacctaaaa 40364692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 35436365 - 35436258
Alignment:
Q  122 ctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaaga 221  Q
    |||| |||| |||||| || |||||| ||| |||||| |||||||||||| ||||| ||||||| |||| ||  ||||| |||||| | |||||||| ||    
T  35436365 ctctagtcactattataagtaaaaaaccactttttaggttcattgaataattgatgtatctagtatataatattgaccagatacataagttattcaatga 35436266  T
Q  222 acctaaaa 229  Q
    ||||||||    
T  35436265 acctaaaa 35436258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 40361997 - 40362095
Alignment:
Q  144 aaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaatgttgttttttct 242  Q
    |||||||| ||||||||||||||||||| ||||| || |  ||||||||  ||||||||||||| ||| ||||||  ||||||||| ||  ||||||||    
T  40361997 aaaatcactttttagattcattgaataattgatgtatttgatttatattgtagaccaaatacattaatcattcaataaacctaaaaagtatttttttct 40362095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 35436231 - 35436345
Alignment:
Q  128 tcattattatgagcaaaaaatcaca---ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacc 224  Q
    |||||||||| ||||||||||| ||   |||||| |||||||||||||| ||| |||| ||  |||||| | || | ||||||||||||||||| |||||    
T  35436231 tcattattataagcaaaaaatc-catttttttaggttcattgaataacttatgtatctggtcaatattatatactagatacatcaattattcaatgaacc 35436329  T
Q  225 taaaatgttgtttttt 240  Q
    ||||| || |||||||    
T  35436330 taaaaagtggtttttt 35436345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 39153323 - 39153399
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||| ||||||||| |||| ||||| || |||| ||||||| ||||||||||||||||||| |||| ||| ||||||    
T  39153323 tttttgattcattgcataaatgatgtatttagtctatattatagaccaaatacatcaattactcaatgaagctaaaa 39153399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 34840607 - 34840670
Alignment:
Q  114 tatactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatg 177  Q
    ||||||||||| |||||||||||| |||||||  |||| ||||||||||||| ||||| |||||    
T  34840607 tatactccctccggtcattattataagcaaaagttcactttttagattcattcaataaatgatg 34840670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 38940215 - 38940270
Alignment:
Q  116 tactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataa 171  Q
    ||||||||| |||||||||||| |||||||| | |||||||||||||||| |||||    
T  38940215 tactccctccggtcattattataagcaaaaattgacattttagattcattcaataa 38940270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 27163278 - 27163197
Alignment:
Q  148 tcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||| ||||||||||| | ||||| ||||| || | ||||||| || |||||| |||||||| |||||||| ||||||||||    
T  27163278 tcactttttagattcactaaataaatgatgtatgtggtttataatatagaccacatacatcatttattcaatgaacctaaaa 27163197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 2456726 - 2456671
Alignment:
Q  116 tactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataa 171  Q
    ||||||||||||||| |||||| || ||||||  || |||||||||||||||||||    
T  2456726 tactccctctggtcactattataagtaaaaaactactttttagattcattgaataa 2456671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 28228999 - 28229082
Alignment:
Q  132 tattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattatt 215  Q
    |||||| |||||||  | ||||||||| |||||| ||||| |||||||| | ||| ||||||||||| | |||||||| |||||    
T  28228999 tattataagcaaaatttaacattttagcttcatttaataaatgatgcatgtggttaatattaaagacgacatacatcatttatt 28229082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 3967840 - 3967726
Alignment:
Q  126 ggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacct 225  Q
    ||||| |||||| |||||||||  || |||||| |||||||||||| ||||| || | |  |||||||| |  ||| ||||||| | |||||| ||||||    
T  3967840 ggtcactattataagcaaaaaactactttttaggttcattgaataaatgatgtatgtggactatattaatggtcaattacatcactcattcaatgaacct 3967741  T
Q  226 aaaatgttgtttttt 240  Q
    |||| || |||||||    
T  3967740 aaaaagtagtttttt 3967726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 240
Target Start/End: Complemental strand, 34275338 - 34275212
Alignment:
Q  115 atactccctctggtcattattatgagcaaaaaatc-acattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatta 213  Q
    |||| ||||| ||||| || ||| ||||||||| | |||||||||||||||| | | | |||||||  |||| | ||||| |||||| |||||||| | |    
T  34275338 atacaccctccggtcactaatataagcaaaaaaactacattttagattcattcatttaatgatgcacatagtctttattatagaccacatacatcattaa 34275239  T
Q  214 ttcaaagaacctaaaatgttgtttttt 240  Q
     | || ||||||||||||| |||||||    
T  34275238 atgaatgaacctaaaatgtagtttttt 34275212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 229
Target Start/End: Complemental strand, 8169225 - 8169129
Alignment:
Q  132 tattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||||| |||||||  | || ||||||||||||| ||||| ||||| || |||| |||| || |||||| |||||||| ||||| || ||||||||||    
T  8169225 tattataagcaaaagttaactttttagattcattcaataaatgatgtatgtagtctata-tatagaccacatacatcatttattgaatgaacctaaaa 8169129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 23797353 - 23797458
Alignment:
Q  126 ggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacct 225  Q
    ||||| |||||| |||||||  |  ||||||||||||||| | ||| ||||| || |||| |||| ||||||||| |||||||| | ||| || ||| ||    
T  23797353 ggtcactattataagcaaaattttgcattttagattcattcattaaatgatgtatgtagtctataataaagaccagatacatcattaattgaatgaatct 23797452  T
Q  226 aaaatg 231  Q
    ||||||    
T  23797453 aaaatg 23797458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 2399988 - 2400064
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||| ||||||||| |||| ||||| || || | ||||||  |||| | ||||||||||||||||| ||||||||||    
T  2399988 tttttgattcattgtataaatgatgtatttaatctatattttagactagatacatcaattattcaacgaacctaaaa 2400064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 4132534 - 4132430
Alignment:
Q  114 tatactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatta 213  Q
    |||||| ||||||||||||||||| | |||||  | || |||||||| |||||||||  | ||| || |||| |||| |||| || | |||||| |||||    
T  4132534 tatacttcctctggtcattattataaacaaaacttaactttttagatacattgaatatttaatgtatttagtctataataaatactatatacattaatta 4132435  T
Q  214 ttcaa 218  Q
    |||||    
T  4132434 ttcaa 4132430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 40800145 - 40800069
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||||| |||||||||||| ||||| || ||| ||| |||| || | ||||||||  ||||||||| ||||||||||    
T  40800145 ttttaggttcattgaataaatgatgtatttagattacattatagtctaaatacattgattattcaatgaacctaaaa 40800069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 6189742 - 6189655
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaatgttgtttttt 240  Q
    ||||||||||||| ||||| ||||| || |||| |||||||  |||||||||||||| |||||| | |||||||||| |||| |||||    
T  6189742 ttttagattcattcaataaatgatgtatttagtctatattattgaccaaatacatcatttattcgatgaacctaaaaagttgattttt 6189655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 230
Target Start/End: Complemental strand, 8793831 - 8793754
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaat 230  Q
    |||| ||||||||| |||| ||||| || |||| ||||||| ||||||||||||||||||| |||| ||| |||||||    
T  8793831 tttttgattcattgcataaatgatgtatttagtctatattatagaccaaatacatcaattactcaatgaatctaaaat 8793754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 27789422 - 27789326
Alignment:
Q  122 ctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 218  Q
    |||||||| ||||||| | |||||||| || | ||| ||||||||||||||||||| || | ||  |||||| | |||| |||||||||||||||||    
T  27789422 ctctggtcgttattataaacaaaaaataacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaa 27789326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 120 - 207
Target Start/End: Complemental strand, 32272763 - 32272678
Alignment:
Q  120 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacat 207  Q
    ||||||||||||| |||| |||||||||| ||  |||||||||||||||||| ||||| |||| || |||| ||  ||||||||||||    
T  32272763 ccctctggtcattgttataagcaaaaaatgac--tttagattcattgaataaatgatgtatctcgtctataatattgaccaaatacat 32272678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 11295784 - 11295685
Alignment:
Q  141 caaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaatgttgtttttt 240  Q
    |||||| | |||||||||||||||| | ||| |||||||| | ||||||| ||||||||| |||||||| ||| | || | | ||||||||||| |||||    
T  11295784 caaaaattaacattttagattcattcattaaatgatgcatgtggtttataataaagaccacatacatcatttaatgaatgtatctaaaatgttgattttt 11295685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 240
Target Start/End: Complemental strand, 17871910 - 17871784
Alignment:
Q  114 tatactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatta 213  Q
    |||||||||||| |||| |||||| ||||||||   |  |||||| |||||| | ||| ||||| || |||| |||||||  |||||||||||||| |||    
T  17871910 tatactccctctagtcactattataagcaaaaatcaattttttaggttcattcattaaatgatgtatttagtctatattattgaccaaatacatcattta 17871811  T
Q  214 ttcaaagaacctaaaatgttgtttttt 240  Q
     | || |||||||||| |||| |||||    
T  17871810 atgaatgaacctaaaaagttgattttt 17871784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 229
Target Start/End: Original strand, 13964418 - 13964527
Alignment:
Q  120 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaa 219  Q
    ||||||||||| |||||| ||||||||   |||||||| ||||||| ||||| ||||| || | || ||||||| ||||||  ||||||| ||| ||||     
T  13964418 ccctctggtcactattataagcaaaaatcaacattttaaattcattcaataaatgatgtatgtggtctatattatagaccatgtacatcatttactcaat 13964517  T
Q  220 gaacctaaaa 229  Q
    ||| ||||||    
T  13964518 gaatctaaaa 13964527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 11258519 - 11258467
Alignment:
Q  128 tcattattatgagcaaaaaatcacattttagattcattgaataactgatgcat 180  Q
    |||||||||| ||||||||||||||||||| ||| ||| |||||||| |||||    
T  11258519 tcattattataagcaaaaaatcacattttaaatttattaaataactggtgcat 11258467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 29358723 - 29358647
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||||||| ||||| |||| ||||| || |||||||||||| || | | |||||| |||||||||| ||||||||||    
T  29358723 ttttagatacattgtataaatgatgtatttagtttatattatagtctagatacattaattattcaatgaacctaaaa 29358647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 5888337 - 5888424
Alignment:
Q  122 ctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatca 209  Q
    ||||||||| |||||| |||||||| | || ||||||||||||| | ||| ||||| || | || |||| ||||||||| ||||||||    
T  5888337 ctctggtcactattataagcaaaaattaacgttttagattcattcattaaatgatgtatgttgtctataataaagaccatatacatca 5888424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 8818696 - 8818758
Alignment:
Q  163 attgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacct 225  Q
    ||||||||| ||||| |||||||||||| || ||| || |||||||||||||| || ||||||    
T  8818696 attgaataattgatgtatctagtttataatatagatcagatacatcaattattaaatgaacct 8818758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 13080224 - 13080110
Alignment:
Q  125 tggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacc 224  Q
    ||||||||||||| | ||||||   |||||||| ||||||||||| | ||||| || | || | |||||||||| | |||||||| ||| | || ||| |    
T  13080224 tggtcattattataaacaaaaatctacattttacattcattgaattaatgatgtatgtggtctttattaaagactacatacatcatttaatgaatgaatc 13080125  T
Q  225 taaaatgttgttttt 239  Q
    |||||||||| ||||    
T  13080124 taaaatgttgatttt 13080110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 271
Target Start/End: Original strand, 17871758 - 17871909
Alignment:
Q  116 tactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattatt 215  Q
    |||||||||||||||||||||| ||||||||   || |||||| |||||| | ||| ||||| || | ||  ||| || |||| |||||||||| ||| |    
T  17871758 tactccctctggtcattattataagcaaaaatcaactttttaggttcattcattaaatgatgtatttggtcaataatatagactaaatacatcatttaat 17871857  T
Q  216 caaagaacctaaaatgttgttttttctttgcttataacagtgactgcagggagtat 271  Q
     || ||||||||||  ||| ||    ||||||||||| |||||||  |||||||||    
T  17871858 gaatgaacctaaaaaattgatt----tttgcttataatagtgactagagggagtat 17871909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 3236366 - 3236427
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 214  Q
    ||||| ||||||||||||| ||||| |||||||||| | |  ||||||||||||||| ||||    
T  3236366 ttttaaattcattgaataattgatgtatctagtttaaaatttagaccaaatacatcatttat 3236427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 12736461 - 12736376
Alignment:
Q  155 ttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaatgttgtttttt 240  Q
    |||| |||||||||||| ||||| || | || || ||||| || || |||||||||| |||||| |||||||||| || |||||||    
T  12736461 ttaggttcattgaataaatgatgtatatggtctacattaatgatcacatacatcaatcattcaatgaacctaaaaagtagtttttt 12736376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 240
Target Start/End: Complemental strand, 13496581 - 13496456
Alignment:
Q  115 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 214  Q
    |||| ||||| ||||| |||||| |||||||| | |||||||| ||||||| | | | |||||||  | || | ||||| ||||||||||||||| | |     
T  13496581 atacaccctccggtcactattataagcaaaaatttacattttaaattcattcatttaatgatgcacatggtctttattatagaccaaatacatcattaaa 13496482  T
Q  215 tcaaagaacctaaaatgttgtttttt 240  Q
    | || ||||||| ||||| |||||||    
T  13496481 tgaatgaacctagaatgtagtttttt 13496456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 27789315 - 27789380
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 218  Q
    |||| |||||||||||||| ||||| |||| || |||| ||  |||||||||||||| ||||||||    
T  27789315 tttttgattcattgaataattgatgtatctggtatataatattgaccaaatacatcagttattcaa 27789380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 31505032 - 31505157
Alignment:
Q  115 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 214  Q
    |||| ||||| ||||| || ||| |||||||||  ||||||||| |||||| | | | |||||||  |||| | ||||| |||||| |||||||| | |     
T  31505032 atacaccctccggtcactaatataagcaaaaaactacattttaggttcattcatttaatgatgcacatagtctttattatagaccacatacatcattaaa 31505131  T
Q  215 tcaaagaacctaaaatgttgtttttt 240  Q
    | || ||||||||||||| |||||||    
T  31505132 tgaatgaacctaaaatgtagtttttt 31505157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 227
Target Start/End: Original strand, 9420585 - 9420697
Alignment:
Q  115 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 214  Q
    |||||||||| |||| ||||||| ||||  || | || |||||||||||||| |||| | ||| |||| || |||||| |  || |  ||||| ||||||    
T  9420585 atactccctccggtccttattataagcagcaattgacgttttagattcattgtataagtaatgtatctggtctatatttataacgaggtacattaattat 9420684  T
Q  215 tcaaagaacctaa 227  Q
    |||||||||||||    
T  9420685 tcaaagaacctaa 9420697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 10934602 - 10934722
Alignment:
Q  120 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaa 219  Q
    ||||| ||||| |||||| |||||||||  | |||||| ||||||| ||| | ||||| || |||| | ||||  |||||| |||||||| ||| | ||     
T  10934602 ccctccggtcactattataagcaaaaaactatattttacattcatttaattaatgatgtatgtagtctttattgtagaccacatacatcatttaatgaat 10934701  T
Q  220 gaacctaaaatgttgtttttt 240  Q
    ||| ||||||||||| |||||    
T  10934702 gaatctaaaatgttgattttt 10934722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 24287777 - 24287873
Alignment:
Q  113 ttatactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatca 209  Q
    |||||| ||||| ||||| |||||| |||||||  |  ||||||||||||||| | ||| ||||| || | || |||| ||||||||| ||||||||    
T  24287777 ttatacaccctccggtcactattataagcaaaactttgcattttagattcattcattaaatgatgtatatggtctataataaagaccatatacatca 24287873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 26229698 - 26229642
Alignment:
Q  187 tatattaaagaccaaatacatcaattattcaaagaacctaaaatgttgttttttctt 243  Q
    ||||||| ||||||||||||| ||||||||| || | |||||| || ||||||||||    
T  26229698 tatattatagaccaaatacataaattattcatagcagctaaaaagtggttttttctt 26229642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 28882663 - 28882783
Alignment:
Q  120 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaa 219  Q
    ||||| ||||| ||||||||||||||    || ||||||||||||| ||||| ||||| || | || ||||| | |||||| ||| |||| ||||| ||     
T  28882663 ccctccggtcactattatgagcaaaagtctactttttagattcattcaataaatgatgtatgtggtatatataatagaccacatatatcatttattgaat 28882762  T
Q  220 gaacctaaaatgttgtttttt 240  Q
     ||||||||| |||| |||||    
T  28882763 aaacctaaaaggttgattttt 28882783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 41178066 - 41177990
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    ||||||||||||| ||| | |||||||| | ||||||||||  ||||| |||||||| | ||| || ||||||||||    
T  41178066 ttttagattcattcaattaatgatgcatgtggtttatattatggaccacatacatcattaattgaatgaacctaaaa 41177990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 8029509 - 8029606
Alignment:
Q  121 cctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 218  Q
    |||| |||||||||||| || || ||||||||||||| ||||||||||||| ||||| || |||  |||||   ||| ||||||||| ||||||||||    
T  8029509 cctccggtcattattataagaaacaaatcacattttaaattcattgaataaatgatgtatttagactatatattagatcaaatacatgaattattcaa 8029606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 271
Target Start/End: Original strand, 3203664 - 3203817
Alignment:
Q  114 tatactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatta 213  Q
    ||||||||||| ||||| |||||| ||||||||   |  |||||| |||||| ||| | ||||| ||| ||| ||||||   |||||||||||||| |||    
T  3203664 tatactccctccggtcactattataagcaaaaatcaattttttaggttcattcaatgaatgatgtatcaagtctatattcttgaccaaatacatcattta 3203763  T
Q  214 ttcaaagaacctaaaatgttgttttttctttgcttataacagtgactgcagggagtat 271  Q
    || || |||||||||| |||| ||    ||||||||||| |||||||| ||| |||||    
T  3203764 ttaaatgaacctaaaaagttgatt----tttgcttataatagtgactggaggaagtat 3203817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 6560798 - 6560678
Alignment:
Q  120 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaa 219  Q
    ||||| ||||| || ||| |||||||||| |||||||||||||||| | | | |||||||  |||| | ||||| |||||| |||||||| | | | ||     
T  6560798 ccctccggtcactaatataagcaaaaaattacattttagattcattcatttaatgatgcacatagtctttattatagaccacatacatcattaaatgaat 6560699  T
Q  220 gaacctaaaatgttgtttttt 240  Q
    ||||||||||||| |||||||    
T  6560698 gaacctaaaatgtagtttttt 6560678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 6686851 - 6686927
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||||| |||||||||||| ||||| || ||||||| |||  || |||||||||| |||||||||| ||||||||||    
T  6686851 ttttaggttcattgaataaatgatgtatttagtttacattgtagtccaaatacattaattattcaatgaacctaaaa 6686927  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 24985975 - 24986044
Alignment:
Q  160 ttcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||||||||||||||||| || |  | ||||||| |||||| ||||||||||||| ||| ||||||||||    
T  24985975 ttcattgaataactgatgtatttgatctatattatagaccatatacatcaattatccaatgaacctaaaa 24986044  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 6033113 - 6032997
Alignment:
Q  114 tatactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatta 213  Q
    ||||| ||||||| |||||||||| ||||||   | | ||||||| |||||  ||||| ||||| || |||| |||||||||||||| |||||| | |||    
T  6033113 tatacaccctctgttcattattataagcaaattttaatattttaggttcatccaataaatgatgtatgtagtctatattaaagaccacatacattattta 6033014  T
Q  214 ttcaaagaacctaaaat 230  Q
    || || ||| |||||||    
T  6033013 ttaaatgaatctaaaat 6032997  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 7649911 - 7649835
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    ||||| ||||||||||||| ||||  || | || ||||||  |||||||||||||||||||||||| ||| ||||||    
T  7649911 ttttaaattcattgaataattgatttatttggtatatattttagaccaaatacatcaattattcaatgaatctaaaa 7649835  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 3012482 - 3012392
Alignment:
Q  139 agcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||||||| |||  ||||||||||||| ||||| ||||| || | ||||| | ||||||||| |||||||| ||||| || || |||||||    
T  3012482 agcaaaaattcatgttttagattcattcaataaatgatgtatgttgtttacaataaagaccacatacatcatttattgaatgatcctaaaa 3012392  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 7384778 - 7384832
Alignment:
Q  164 ttgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 218  Q
    |||||||| ||||||||||||| |||||||  || ||||||||||| ||||||||    
T  7384778 ttgaataattgatgcatctagtctatattattgatcaaatacatcagttattcaa 7384832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 24089757 - 24089702
Alignment:
Q  202 atacatcaattattcaaagaacctaaaatgttgttttttctttgcttataacagtgac 259  Q
    ||||||||||||||||| |||||||||| || ||||||  ||||||||||| ||||||    
T  24089757 atacatcaattattcaatgaacctaaaaagtggttttt--tttgcttataatagtgac 24089702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 1158281 - 1158346
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 218  Q
    ||||||||||||||||||| | ||| ||   || ||||||  ||||||||||||||||||||||||    
T  1158281 ttttagattcattgaataattaatgtattcggtctatattctagaccaaatacatcaattattcaa 1158346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 13506966 - 13506886
Alignment:
Q  128 tcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatca 209  Q
    |||||||||| |||||||| | |||||||| ||| ||| | ||| ||||||||||||| |||| |||||| || ||||||||    
T  13506966 tcattattataagcaaaaa-taacattttaaatttattcattaaatgatgcatctagtctataataaagatcatatacatca 13506886  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 20703525 - 20703436
Alignment:
Q  140 gcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    ||||||| | ||||||| | |||||||||||  | ||| || | || ||||||| ||||||||||||| || ||||||| ||||||||||    
T  20703525 gcaaaaatttacatttttggttcattgaatatttaatgtatttggtctatattatagaccaaatacattaaatattcaatgaacctaaaa 20703436  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 33122968 - 33122887
Alignment:
Q  148 tcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||| ||||||||||||| ||||| |||||||| | ||  |||||| | ||||||||||||| ||||| || | ||||||||    
T  33122968 tcactttttagattcatttaataaatgatgcatgtggtccatattataaaccaaatacatcatttattgaatggacctaaaa 33122887  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 8920490 - 8920550
Alignment:
Q  158 gattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 218  Q
    |||||||||||||||||||| | || |  ||||||| | | ||||||||||||||||||||    
T  8920490 gattcattgaataactgatgtaccttgactatattataaatcaaatacatcaattattcaa 8920550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 28555088 - 28554976
Alignment:
Q  120 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaa 219  Q
    ||||||||||| |||||| ||||||||   |||||||||||||||| | | | |||||||  | || | ||||| |||||| |||||||| | | | ||     
T  28555088 ccctctggtcactattataagcaaaaatctacattttagattcatttatttaatgatgcacatggtctttattatagaccatatacatcattaaatgaat 28554989  T
Q  220 gaacctaaaatgt 232  Q
    |||||||||||||    
T  28554988 gaacctaaaatgt 28554976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 31398367 - 31398247
Alignment:
Q  120 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaa 219  Q
    ||||| ||||| |||||| |||||||  | |||||||||||||||| | | | |||||||  | || | ||||| |||||| |||||||| | | | ||     
T  31398367 ccctccggtcactattataagcaaaagtttacattttagattcattcatttaatgatgcacatggtctttattatagaccacatacatcattaaatgaat 31398268  T
Q  220 gaacctaaaatgttgtttttt 240  Q
    ||||||||||||| |||||||    
T  31398267 gaacctaaaatgtagtttttt 31398247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 423283 - 423360
Alignment:
Q  152 attttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||||||||| ||||||||| |||||||| | | ||| | || ||||| |||||||||||||||||| ||| ||||||    
T  423283 attttagatttattgaataattgatgcatatggattagaatatagaccgaatacatcaattattcaatgaatctaaaa 423360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 65986 - 66062
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    |||||||||||||||| || | ||| ||||||| ||||||  | ||| ||||||| |||||||||| ||||||||||    
T  65986 ttttagattcattgaaaaattcatgtatctagtctatattttaaaccgaatacataaattattcaatgaacctaaaa 66062  T

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Target: scaffold0756 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0756
Description:

Target: scaffold0756; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 3550 - 3626
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    ||||||||||||| ||| | ||||| || | |||||||||| |||||| |||||||| | ||| || ||||||||||    
T  3550 ttttagattcattcaatcaatgatgtatgtggtttatattatagaccacatacatcattgattgaatgaacctaaaa 3626  T

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Target: scaffold0542 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 3522 - 3446
Alignment:
Q  153 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 229  Q
    ||||||||||||| ||| | ||||| || | |||||||||| |||||| |||||||| | ||| || ||||||||||    
T  3522 ttttagattcattcaatcaatgatgtatgtggtttatattatagaccacatacatcattgattgaatgaacctaaaa 3446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 46851 - 46799
Alignment:
Q  130 attattatgagcaaaaaatcacattttagattcattgaataactgatgcatct 182  Q
    |||||||| | |||||||| || ||||||||| ||||||||||||||| ||||    
T  46851 attattataaacaaaaaataactttttagattgattgaataactgatgtatct 46799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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