View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9358_low_11 (Length: 291)
Name: NF9358_low_11
Description: NF9358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9358_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 17005432 - 17005306
Alignment:
| Q |
150 |
ttatgggaaatgttctatgtcaaattcctggtttgttggtgcttgacgaaggacatacaccaagaaacnnnnnnngtggtatttggcaagttttgtcgga |
249 |
Q |
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| T |
17005432 |
ttatgggaaatgttctacgtcaaattcctggtttgttggtgcttgacgaaggacatacgccaagaaacaaaaaaagtggtatttggcaagttttgtcgga |
17005333 |
T |
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| Q |
250 |
agttcaagcacgaaagaggatcatcct |
276 |
Q |
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| T |
17005332 |
agttcaaacacgaaagcgaatcatcct |
17005306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 17005572 - 17005475
Alignment:
| Q |
10 |
gtggtacaaagaaaagagcattcttggaatcagttacaatttgtacgagaagctagccggaggaggaggggaatctgacgatgagagaggggaagatg |
107 |
Q |
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| T |
17005572 |
gtggtacaaagaaaagagcattcttggaatcagttacagtttgtacatgaagctagccggaggaggaggggaatctgacgatgagagaggggaggatg |
17005475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 16821794 - 16821734
Alignment:
| Q |
11 |
tggtacaaagaaaagagcattcttggaatcagttacaatttgtacgagaagctagccggag |
71 |
Q |
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| T |
16821794 |
tggtacaaagaaaagagcattctgggaatcagttacaatttgtacgagaagctagccggag |
16821734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 16965855 - 16965772
Alignment:
| Q |
10 |
gtggtacaaagaaaagagcattcttggaatcagttacaatttgtacgagaagctagccggaggaggaggggaatctgacgatga |
93 |
Q |
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| T |
16965855 |
gtggtacaaagaaagtagcattctcgggatcagttacagtttgtacgagaagctagctggaggagggggggaatgtgatgatga |
16965772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 16990028 - 16989976
Alignment:
| Q |
23 |
aagagcattcttggaatcagttacaatttgtacgagaagctagccggaggagg |
75 |
Q |
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| T |
16990028 |
aagagcattctgggaatcagttacagtttgtacgagaagatagccggaggagg |
16989976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 16989882 - 16989841
Alignment:
| Q |
175 |
tcctggtttgttggtgcttgacgaaggacatacaccaagaaa |
216 |
Q |
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| T |
16989882 |
tcctggtttgttggttctagacgaaggacatacaccgagaaa |
16989841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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