View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9358_low_14 (Length: 246)
Name: NF9358_low_14
Description: NF9358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9358_low_14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 4106024 - 4105795
Alignment:
| Q |
17 |
aggtggcacctaactcaagtgattgattaggcaaaagggtatcagtaggaaacttaaaactttcccaaacaatagcagatttgttgtttacaagaacaaa |
116 |
Q |
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| T |
4106024 |
aggtggcacctaactcaagtgattgattaggcaaaagggtatcagtaggaaacttaaaactttcccaaacaatagcagatttgttgtttacaagaacaaa |
4105925 |
T |
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| Q |
117 |
gtttccattatcaagcatggttccataggaaacaatatcgtttggttgtgctgtccaaatggattcattttgtggatttgtcaacgtgagtccacctgat |
216 |
Q |
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| T |
4105924 |
gtttccattatcaagcatggttccataggaaacaatatcgtttggttgtgctgtccaaatggattcattttgtggatttgtcaacgtgagtccacctgat |
4105825 |
T |
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| Q |
217 |
gttagctgaacctgtgatcctgttggtgct |
246 |
Q |
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| T |
4105824 |
gttagctgaacctgtgatcctgttggtgct |
4105795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 4129208 - 4128985
Alignment:
| Q |
23 |
cacctaactcaagtgattgattaggcaaaagggtatcagtaggaaacttaaaactttcccaaacaatagcagatttgttgtttacaagaacaaagtttcc |
122 |
Q |
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| T |
4129208 |
cacctaattcaagagattgattaggcaaaagggtgtcggtgggaaacttgaaactttcccaaacaatagaagaattcttattaacaagaacaaagtttcc |
4129109 |
T |
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| Q |
123 |
attatcaagcatggttccataggaaacaatatcgtttggttgtgctgtccaaatggattcattttgtggatttgtcaacgtgagtccacctgatgttagc |
222 |
Q |
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| T |
4129108 |
agtatcatgcatgattccataggaaacagctgtgtttggttgtgctgtccaaatggattcaccttgttgagttgtcaacgtgagtcctcctgatgttagc |
4129009 |
T |
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| Q |
223 |
tgaacctgtgatcctgttggtgct |
246 |
Q |
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| T |
4129008 |
tgaacttgtgatcctgtcggtgct |
4128985 |
T |
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