View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9358_low_16 (Length: 243)
Name: NF9358_low_16
Description: NF9358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9358_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 35976628 - 35976415
Alignment:
| Q |
11 |
gttttacaactgttcttaattagtttaatgatagatgaattagttttgttgttttaatttgtgttgattaagtgaatagtttaattatatctaggttttg |
110 |
Q |
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| T |
35976628 |
gttttacaaccgttcttaattagtttaatgatagatgaattagttttgttgttttaatttgtgttgattaagtgaatagtttaattatatctaggttttg |
35976529 |
T |
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| Q |
111 |
tttgagactgagctaggtattagaaaattttgttcaatttgtgtgcaacactattca-ggaaatcttattagaaagaggatgcaattttatcaccttgtt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||| |
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| T |
35976528 |
tttgagactgagctaggtattagaaaattttgttcaatttgtgtgcaacactattcagggaaatcttattagaaagaggatgcagttttatcaccctgtt |
35976429 |
T |
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| Q |
210 |
catggagtatagat |
223 |
Q |
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|||||||||||||| |
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| T |
35976428 |
catggagtatagat |
35976415 |
T |
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