View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9358_low_25 (Length: 203)
Name: NF9358_low_25
Description: NF9358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9358_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 1517972 - 1518143
Alignment:
| Q |
19 |
ctccaatgaggtcaagaagcacatcttgctccttttttcctgtggaattatctttcattccataccatatttcaaacaaagatatggtcttgttattcga |
118 |
Q |
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| T |
1517972 |
ctccaatgaggtcaagaagcacatcttgctccttttttcctgtggaattatctttcattccattccatatttcaaacaaagatatggtcttgttattcga |
1518071 |
T |
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| Q |
119 |
cctcgcgaagtaaaatccagtatttatttgatgtttttctgaccaaggatcattaaggtatgaatctgtgct |
190 |
Q |
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| T |
1518072 |
cctcgcaaagtaaaatccagtatttatttgatgtttttctgaccaaggatcattaaggtatgagtctgtgct |
1518143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 179
Target Start/End: Original strand, 1512772 - 1512929
Alignment:
| Q |
22 |
caatgaggtcaagaagcacatcttgctccttttttcctgtggaattatctttcattccataccatatttcaaacaaagatatggtcttgttattcgacct |
121 |
Q |
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| T |
1512772 |
caatgaggtcaataagcacatcttgctcctttttacctgtggaattgtctttctttccataccatgtttcaaacaaggatatggtctttttatttgacct |
1512871 |
T |
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| Q |
122 |
cgcgaagtaaaatccagtatttatttgatgtttttctgaccaaggatcattaaggtat |
179 |
Q |
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| T |
1512872 |
cacaaagaaaaatccagtattgatcaaatgtttttctgaccaaggatcaccaaggtat |
1512929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 35 - 170
Target Start/End: Original strand, 1522351 - 1522486
Alignment:
| Q |
35 |
aagcacatcttgctccttttttcctgtggaattatctttcattccataccatatttcaaacaaagatatggtcttgttattcgacctcgcgaagtaaaat |
134 |
Q |
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| T |
1522351 |
aagcacatcttgctcctttttttctgtgaaattatctttcattccataccatgtctcaaacaaagatatggtcttgttgtttgatctcacaaagaaaaat |
1522450 |
T |
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| Q |
135 |
ccagtatttatttgatgtttttctgaccaaggatca |
170 |
Q |
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| T |
1522451 |
ccagtattgactcgatttttttctgaccaaggatca |
1522486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 190
Target Start/End: Original strand, 16643647 - 16643814
Alignment:
| Q |
23 |
aatgaggtcaagaagcacatcttgctccttttttcctgtggaattatctttcattccataccatatttcaaacaaagatatggtcttgttattcgacctc |
122 |
Q |
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| T |
16643647 |
aatgaggtcaagaagaacatcttgctctttttttcctgtggaattgtctttctttccataccatgtttcaaacaaagatatggtcttgttattggacctt |
16643746 |
T |
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| Q |
123 |
gcgaagtaaaatccagtatttatttgatgtttttctgaccaaggatcattaaggtatgaatctgtgct |
190 |
Q |
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| T |
16643747 |
acaaagtaaaatccggtattgattctgtgtttttctgaccaaggatcatcaagatataaatctgtgct |
16643814 |
T |
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