View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9358_low_3 (Length: 400)
Name: NF9358_low_3
Description: NF9358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9358_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 17594185 - 17593921
Alignment:
| Q |
1 |
agttatgggtcagaaaatggaggaagagattgcatcttc--ttcctagcaatgaaatgtagctagatattatgtggaaattcggagttccaaccccgata |
98 |
Q |
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| T |
17594185 |
agttatgggtcagaaaatggaggaagagattgcatcttcacttcctagcaatgaaatgtagc-agatattt-----------ggagttccaaccctgata |
17594098 |
T |
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| Q |
99 |
tttgcatactgtaatgtccctatcagtgtcagctgagctatgctcgttcatggaactcatcctaatgtatttattttcctatgttgtgtgattaataaga |
198 |
Q |
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| T |
17594097 |
tttgcatattgtaatgtccct------gtcggctgagctatgctcgttcatgggactcatccaaatatatttatttccctatgttgtgtgattaataaga |
17594004 |
T |
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| Q |
199 |
tcaataactaaataaaacaaaaggttaaataatctcatattatgtttgtagtccctgatttctttcgtgatttattgtctttg |
281 |
Q |
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| T |
17594003 |
tcaataactaaataaaacaaaatgttaaataatctcatattttgtttgtagtccctgatttctttcgtgatttattgtctttg |
17593921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 17593850 - 17593818
Alignment:
| Q |
351 |
aataccgataacaattaaatagattcacatatt |
383 |
Q |
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| T |
17593850 |
aataccgataacagttaaatagattcacatatt |
17593818 |
T |
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