View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9358_low_5 (Length: 399)

Name: NF9358_low_5
Description: NF9358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9358_low_5
NF9358_low_5
[»] chr1 (4 HSPs)
chr1 (12-384)||(5398096-5398476)
chr1 (324-382)||(5388875-5388932)
chr1 (34-72)||(48915281-48915319)
chr1 (28-70)||(49177353-49177395)
[»] chr8 (5 HSPs)
chr8 (324-374)||(4215476-4215525)
chr8 (34-70)||(4835076-4835112)
chr8 (324-377)||(4053850-4053902)
chr8 (324-377)||(3925017-3925069)
chr8 (328-372)||(4223700-4223743)
[»] chr2 (3 HSPs)
chr2 (12-68)||(31750424-31750481)
chr2 (34-70)||(23395882-23395918)
chr2 (34-70)||(36562837-36562873)
[»] chr7 (1 HSPs)
chr7 (28-67)||(9488861-9488900)
[»] chr4 (1 HSPs)
chr4 (325-371)||(11952603-11952648)


Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 12 - 384
Target Start/End: Original strand, 5398096 - 5398476
Alignment:
Q  12 agagagatagagaca-tggtattaatggcaccaaaagccaatggcacccaagtgctacccgatataacccat--------ctttatcaggcatgccagca 102  Q
    ||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||        ||||||||||||||| ||||    
T  5398096 agagagatagagacaatggtactaatggcaccaaaagccaatgacacccaagtgctacccgatataacccattaacccatctttatcaggcatgc-agca 5398194  T
Q  103 agcgaagacaaaatgcataatcaatgagtcaaaaaagttatcaccctaaattaattcagtgtggcttgctagccagttttgctatagcacttaattaatt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5398195 agcgaagacaaaatgcataatcaatgagtcaaaaaagttatcaccctaaattaattcagtgtggcttgctagccagttttgctatagcacttaattaatt 5398294  T
Q  203 caagtgtgttaattaattattccttctataataatcaactggccaaccttcatatttaataccatggttcccacacggttaccctaatttgtgaaaatat 302  Q
    ||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5398295 cacctgtgttaattaattattccttctataataatcaactggccaatcttcatatttaataccatggttcccacacggttaccctaatttgtgaaaatat 5398394  T
Q  303 ttttctcatgacaaggcagagttaattcattcacttctcatttaaggaaatcatatagttctataaattggagtggtttgga 384  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5398395 ttttctcatgacacggcagagttaattcattcacttctcatttaaggaaatcatatagttctataaatcggagtggtttgga 5398476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 324 - 382
Target Start/End: Original strand, 5388875 - 5388932
Alignment:
Q  324 ttaattcattcacttctcatttaaggaaatcatatagttctataaattggagtggtttg 382  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||    
T  5388875 ttaattcattcacttctcatttaaggaaatcat-tagttcgataaattgcagtggtttg 5388932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 48915281 - 48915319
Alignment:
Q  34 aatggcaccaaaagccaatggcacccaagtgctacccga 72  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  48915281 aatggcaccaaaagccaatgacacccaagtgctacccga 48915319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 49177395 - 49177353
Alignment:
Q  28 ggtattaatggcaccaaaagccaatggcacccaagtgctaccc 70  Q
    |||| |||||||||||||||||||||||||| |||||||||||    
T  49177395 ggtactaatggcaccaaaagccaatggcacctaagtgctaccc 49177353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 4215476 - 4215525
Alignment:
Q  324 ttaattcattcacttctcatttaaggaaatcatatagttctataaattgga 374  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  4215476 ttaattcattcacttctcatttaaggaaatca-atagatctataaattgga 4215525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 4835076 - 4835112
Alignment:
Q  34 aatggcaccaaaagccaatggcacccaagtgctaccc 70  Q
    |||||||||||||||||||||||||||||||||||||    
T  4835076 aatggcaccaaaagccaatggcacccaagtgctaccc 4835112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 377
Target Start/End: Original strand, 4053850 - 4053902
Alignment:
Q  324 ttaattcattcacttctcatttaaggaaatcatatagttctataaattggagtg 377  Q
    |||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  4053850 ttaattgattcacttctcatttaaggtaatca-atagtcctataaattggagtg 4053902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 377
Target Start/End: Complemental strand, 3925069 - 3925017
Alignment:
Q  324 ttaattcattcacttctcatttaaggaaatcatatagttctataaattggagtg 377  Q
    |||||| ||||||||||||||||||| ||| || |||| |||||||||||||||    
T  3925069 ttaattgattcacttctcatttaaggtaataat-tagtcctataaattggagtg 3925017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 372
Target Start/End: Original strand, 4223700 - 4223743
Alignment:
Q  328 ttcattcacttctcatttaaggaaatcatatagttctataaattg 372  Q
    |||||||||||||||||||||||||  || |||||||||||||||    
T  4223700 ttcattcacttctcatttaaggaaaatat-tagttctataaattg 4223743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 31750481 - 31750424
Alignment:
Q  12 agagagatagagacat-ggtattaatggcaccaaaagccaatggcacccaagtgctac 68  Q
    ||||||||||| |||  ||||| |||||||||||||||||||||||||||||||||||    
T  31750481 agagagatagacacaaaggtatcaatggcaccaaaagccaatggcacccaagtgctac 31750424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 23395918 - 23395882
Alignment:
Q  34 aatggcaccaaaagccaatggcacccaagtgctaccc 70  Q
    |||||||||||||||||||||||||||||||| ||||    
T  23395918 aatggcaccaaaagccaatggcacccaagtgccaccc 23395882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 36562837 - 36562873
Alignment:
Q  34 aatggcaccaaaagccaatggcacccaagtgctaccc 70  Q
    |||| |||||||||||||||||||||||| |||||||    
T  36562837 aatgacaccaaaagccaatggcacccaagagctaccc 36562873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 9488861 - 9488900
Alignment:
Q  28 ggtattaatggcaccaaaagccaatggcacccaagtgcta 67  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  9488861 ggtatcaatggcaccaaaagccaatggcacccaagtgcta 9488900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 371
Target Start/End: Complemental strand, 11952648 - 11952603
Alignment:
Q  325 taattcattcacttctcatttaaggaaatcatatagttctataaatt 371  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||    
T  11952648 taattcattcacttctcatttaaggaaatca-ctagttctataaatt 11952603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University