View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9358_low_9 (Length: 307)
Name: NF9358_low_9
Description: NF9358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9358_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 5 - 290
Target Start/End: Original strand, 3017902 - 3018185
Alignment:
| Q |
5 |
gaggagcacagatagaacgaaatgcacatttaataaggaagaagcggctggatttatatatgatattcagaggaaaaaatgttatgacaagcacaacctg |
104 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
3017902 |
gaggagcacaaatagaacgaaatgcacatttaataaggaagaagcggctggatttatatatgatattcaggggccaaaatgttatgacaagcacaacctg |
3018001 |
T |
|
| Q |
105 |
taatacaaattcattagcatataagtatactgtttggataaatagtttgtgtataagcggtttggctgtacacattgactgaccgatataccaatacatg |
204 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3018002 |
taatacaaattcattagcata--agtatactgtttggataaatagtttgtgtataagcggtttggctgtacacattgactgaccgatataccaatacatg |
3018099 |
T |
|
| Q |
205 |
aattgttccagcagtttttgtcataaaccctttgtttcctatagaaaggggaccttggtaatccggagttcagtcaggagttatgt |
290 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3018100 |
aattgttccaacattttttgtcataaaccctttgtttcctatagaaaggggaccttggtaatccggagttcagtcaggaggtatgt |
3018185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 2999004 - 2999136
Alignment:
| Q |
5 |
gaggagcacagatagaacgaaatgcacatttaataaggaagaagcggctggatttatatatgatattcagaggaaaaaatgttatgacaagcacaacctg |
104 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||||| ||||| |||||||||||| |
|
|
| T |
2999004 |
gaggagcacaaatagcacgaaatgcacatttaataaggaagaagcggcttgatttatatatgatattgaagggacaaaataatatgagaagcacaacctg |
2999103 |
T |
|
| Q |
105 |
taatacaaattcattagcatataagtatactgt |
137 |
Q |
| |
|
||||||||||| ||||||| | |||| |||||| |
|
|
| T |
2999104 |
taatacaaattgattagcaaacaagtctactgt |
2999136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 3032676 - 3032796
Alignment:
| Q |
5 |
gaggagcacagatagaacgaaatgcacatttaataaggaagaagcggctggatttatatatgatattcagaggaaaaaatgttatgacaagcacaacctg |
104 |
Q |
| |
|
|||||||||| |||| | ||||||||||||||| ||||||||||||||||| ||||||||||||||| | ||| ||||||||||| ||||||||||||| |
|
|
| T |
3032676 |
gaggagcacaaatagcatgaaatgcacatttaacaaggaagaagcggctggttttatatatgatattgaagggacaaaatgttatggcaagcacaacctg |
3032775 |
T |
|
| Q |
105 |
taatacaaattcattagcata |
125 |
Q |
| |
|
|||| |||||| ||||||||| |
|
|
| T |
3032776 |
taatgcaaatttattagcata |
3032796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 20060883 - 20060776
Alignment:
| Q |
5 |
gaggagcacagatagaacgaaatgcacatttaataaggaagaagcggctggatttatatatgatattcagaggaaaaaatgttatgacaagcacaacctg |
104 |
Q |
| |
|
|||||| ||| |||| ||||||||||||||||||||||||||||||||| |||||||||| ||| || | ||| ||| |||||| |||| ||||||||| |
|
|
| T |
20060883 |
gaggagaacaaatagcacgaaatgcacatttaataaggaagaagcggctcgatttatatacgatgttgaagggacaaattgttataacaaccacaacctg |
20060784 |
T |
|
| Q |
105 |
taatacaa |
112 |
Q |
| |
|
|||||||| |
|
|
| T |
20060783 |
taatacaa |
20060776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University