View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_high_16 (Length: 329)
Name: NF9359_high_16
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_high_16 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 11155861 - 11156178
Alignment:
| Q |
13 |
ataatactataatatgtgcatttgataatggttgcaatcaaacaaaaatgatcatatagttaaataaggtagcggcgccgtctgta-tttgttttcagtt |
111 |
Q |
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| T |
11155861 |
ataatactataatatatgcatttgataatggttgcaatccaacaaaaatgatcatatagttaattaaggtagcggcgccgtctgtattttgttttcagtt |
11155960 |
T |
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| Q |
112 |
tttgccgcgagtttttgtgtgccttgcatttactcgacgtgaataaatttgccatttc--nnnnnnnngttaattaaggtagcttcaaaatctagggtta |
209 |
Q |
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| T |
11155961 |
tttgccgcgagtttttatgcgccttgcatttactcgacgtgaataaattttccgtttcaaaaaaaaaagttaattaaggtagcttcaaaatctagggtta |
11156060 |
T |
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| Q |
210 |
tttttataatgattaaatnnnnnnnnnccatttcaagaagttcatcatctatgaaaattaaatactacatcacaaggctaagagtaacacttattttacc |
309 |
Q |
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| T |
11156061 |
tttttataatgattaaat--aaaaaaaccatttcaagaagttaatcatctatgaaaattaaatactacatcacaaggctaagagtaacacttattttacc |
11156158 |
T |
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| Q |
310 |
tatgctgaaataatacaggc |
329 |
Q |
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|||| ||||||||||||||| |
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| T |
11156159 |
tatgatgaaataatacaggc |
11156178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 35443325 - 35443290
Alignment:
| Q |
134 |
cttgcatttactcgacgtgaataaatttgccatttc |
169 |
Q |
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| T |
35443325 |
cttgcatttactcgacgagaataaatttgccatttc |
35443290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 8503978 - 8503932
Alignment:
| Q |
123 |
tttttgtgtgccttgcatttactcgacgtgaataaatttgccatttc |
169 |
Q |
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| T |
8503978 |
tttttatgcgccttgcatttactcgacgagaataaatttgccatttc |
8503932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 46282702 - 46282748
Alignment:
| Q |
123 |
tttttgtgtgccttgcatttactcgacgtgaataaatttgccatttc |
169 |
Q |
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| T |
46282702 |
tttttatgtgtcttgcatttactcgacgagaataaatttgtcatttc |
46282748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 31034376 - 31034318
Alignment:
| Q |
111 |
ttttgccgcgagtttttgtgtgccttgcatttactcgacgtgaataaatttgccatttc |
169 |
Q |
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|||| |||||||| ||| || | ||||||||||||||||| |||||||||| ||||||| |
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| T |
31034376 |
tttttccgcgagtgtttatgcgtcttgcatttactcgacgagaataaatttaccatttc |
31034318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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