View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_high_7 (Length: 479)
Name: NF9359_high_7
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 411; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 9 - 463
Target Start/End: Original strand, 7558560 - 7559014
Alignment:
| Q |
9 |
acacatgaaaacgaccatggcccataatttcttcgtttcattttcctttcaacaaactatataaatatgtctttaactcacgtcattcttatttcacttc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||| |||||| |||||||||||| |
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| T |
7558560 |
acacatgaaaacgaccatggcccataatttcttcgtttcattttcctttgaacaaaccatataaatatgtctttaattcaagtcatttttatttcacttc |
7558659 |
T |
|
| Q |
109 |
caacattattcacaactccttcattttcttgttccatcaaaaccatgacaaattttgagtacccaacacatttttctaatgaactacccaacgacgttgt |
208 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| |
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| T |
7558660 |
caacattattcacagctccttcattttcttgttccatcaaaaccatgacaaattttgagttcccaacaaatttttctaatgaactacccaacgacattgt |
7558759 |
T |
|
| Q |
209 |
tttctgcggaaaagtcataacacgcaaaactgaaacacaagtaaacaaagacaacaccacggttgttgccggtatccggtcgctgtccgtcaaggaaaac |
308 |
Q |
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| T |
7558760 |
tttctgcggaaaagtcataacacgcaaaactgaaacacaagtaaacaaagacaacaccacggttgttgccggtatccggtcgctgtccgtcaaggaaaac |
7558859 |
T |
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| Q |
309 |
cggtaccgaaggagttcgagtaagagttacacaggtatgtttgggatggtgaagtttccgttacaaatggagttgagtgatattaaaatgaggcaagagc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7558860 |
cggtaccgaaggagttcgagtaagagttacacaggtatgtttgggatggtgaagtttccgttacaaatggagttgagtgatattaaaatgaggcaagagc |
7558959 |
T |
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| Q |
409 |
gtagggagccgatgaagctgccaaagtttacggaggaggaggaccgcgatggagg |
463 |
Q |
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| T |
7558960 |
gtagggagccgatgaagctgccaaagtttacggaggaggaggactgcaatggagg |
7559014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 24 - 463
Target Start/End: Original strand, 7562704 - 7563145
Alignment:
| Q |
24 |
catggcccataatttcttcgtttcattttcctttcaacaaac--tatataaatatgtctttaactcacgtcattcttatttcacttccaacattattcac |
121 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
7562704 |
catggtccataatttcttcgtttcattttccattcaacaaaccatatataaatatgtctttaactcaagtcattcttatttcacttccaactttattcac |
7562803 |
T |
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| Q |
122 |
aactccttcattttcttgttccatcaaaaccatgacaaattttgagtacccaacacatttttctaatgaactacccaacgacgttgttttctgcggaaaa |
221 |
Q |
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| T |
7562804 |
aactccttcattttcttgttccatcaaatccatgacaaattttgagttccccacaaatttttctaatgaattaccaaacgacgttgttttctgcggaaaa |
7562903 |
T |
|
| Q |
222 |
gtcataacacgcaaaactgaaacacaagtaaacaaagacaacaccacggttgttgccggtatccggtcgctgtccgtcaaggaaaaccggtaccgaagga |
321 |
Q |
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| T |
7562904 |
gtcataacacgcaaaactgaaccacaagcaaacaaagacaacaccacggttgttgccggtatccggtcgctgtccgtcaaggaaaaccggaaccgaagga |
7563003 |
T |
|
| Q |
322 |
gttcgagtaagagttacacaggtatgtttgggatggtgaagtttccgttacaaatggagttgagtgatattaaaatgaggcaagagcgtagggagccgat |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7563004 |
gttcgagtaagagttacacaggtatgtttgggatggtgaagtttccgttacaaatggagttgagtgatattaaaatgaggcaagagcgtagggatccgat |
7563103 |
T |
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| Q |
422 |
gaagctgccaaagtttacggaggaggaggaccgcgatggagg |
463 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
7563104 |
gaagctgccaaagtttacggaggaggaggaccgcgatggagg |
7563145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 179 - 451
Target Start/End: Original strand, 7567911 - 7568193
Alignment:
| Q |
179 |
tttttctaatgaactacccaacgacgttgttttctgcggaaaagtcataacacgcaaaactga----aacacaagtaaacaaagacaacaccacggttgt |
274 |
Q |
| |
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|||||||| ||||||||| || ||||||||||||||| |||||||||||||||| |||||| | | ||||| |||||||||| ||||||| |||| |
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| T |
7567911 |
tttttctagtgaactaccaaatgacgttgttttctgcagaaaagtcataacacgtaaaactaactaaaccacaaacaaacaaagacgacaccacaattgt |
7568010 |
T |
|
| Q |
275 |
tgccggtatccggtcgctgtccgtcaaggaaaaccggtaccgaaggagttcgagt------aagagttacacaggtatgtttgggatggtgaagtttccg |
368 |
Q |
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| T |
7568011 |
tgccggtatccggtcactgtccgtcaaggaaaaccggtattggaggagttcgagtgagagaaagagttacacgggtatgtttgggatggtgaagtttccg |
7568110 |
T |
|
| Q |
369 |
ttacaaatggagttgagtgatattaaaatgaggcaagagcgtagggagccgatgaagctgccaaagtttacggaggaggagga |
451 |
Q |
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| T |
7568111 |
ttacaaatggagttgattgatattaaaatgaggcaagagcgtagggaaccgatgaagctgccgaagtttacggagcaggagga |
7568193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 406
Target Start/End: Original strand, 7544635 - 7544711
Alignment:
| Q |
330 |
aagagttacacaggtatgtttgggatggtgaagtttccgttacaaatggagttgagtgatattaaaatgaggcaaga |
406 |
Q |
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| T |
7544635 |
aagagttatactggtatatttgggacggtgaagtttccattgcaaatggaactgagtgatatgaagacgaggcaaga |
7544711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 406
Target Start/End: Original strand, 7554413 - 7554489
Alignment:
| Q |
330 |
aagagttacacaggtatgtttgggatggtgaagtttccgttacaaatggagttgagtgatattaaaatgaggcaaga |
406 |
Q |
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| T |
7554413 |
aagagttatactggtatatttgggacggtgaagtttccattgcaaatggaactgagtgatatgaagacgaggcaaga |
7554489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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