View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_11 (Length: 567)
Name: NF9359_low_11
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 383
Target Start/End: Complemental strand, 36659551 - 36659183
Alignment:
| Q |
15 |
aaaaatatcatattctgcgttgtttattgattgatatatattatattgatgcacccatgaatattctagcacttgcaggatcttggggccaaggattttg |
114 |
Q |
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| T |
36659551 |
aaaaatatcatattctgcgttgtttattgattgatatatattatattgatgcacccatgaatattctagcacttgcaggatcttggggccaaggattttg |
36659452 |
T |
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| Q |
115 |
aggaagggtacatggaggatcgacacccacgtggtatgatgtttatatcgcttaagggacaaaatgggaaaattgaggagcttgcgagaagcatgaaagg |
214 |
Q |
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| T |
36659451 |
aggaagggtacatggaggatcgacacccacgtgg--tgatgtttacatcgcttaagggacaaaatgggaaaattgaggagcttgcgagaagcatgaaagg |
36659354 |
T |
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| Q |
215 |
tgagat-aaaaattctcttttgaaaattgtatttttgaatgacattttttctccaaaagtgnnnnnnnaaaggatacaaaatttaaatatttattagttg |
313 |
Q |
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| T |
36659353 |
tgagataaaaaattctcttttggaaattgtatttttgaatgacattttttcaccaaaagtgtttttttaaaggatacaaaatttaaatatttattagttg |
36659254 |
T |
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| Q |
314 |
tgtacgtccaaactaattttcaggtgtgagaagtttcttca-nnnnnnngctttaaatcaaaagcccaaaa |
383 |
Q |
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| T |
36659253 |
tgtacgtccaaactaattttcaggtgtgaaaagtttcttcattttttttgctttaaatcaaaagcccaaaa |
36659183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 458 - 555
Target Start/End: Complemental strand, 36658511 - 36658413
Alignment:
| Q |
458 |
tcatctcttatgaacaagtcaaccattgatttttcgccacacatattccgagcaaatttccatattacatgtatttcaagacc-tttcatttttagtat |
555 |
Q |
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| T |
36658511 |
tcatctcttatgaacaagtcaaccattgatttttcgccacacatattccgagcaaatttccatattacatgtatttcaagacctttttatttttagtat |
36658413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 469 - 555
Target Start/End: Complemental strand, 13032644 - 13032557
Alignment:
| Q |
469 |
gaacaagtcaaccattgatttttcgccacacatattccgagcaaatttccatattacatgtatttcaagacctt-tcatttttagtat |
555 |
Q |
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| T |
13032644 |
gaacaagtcaaccattaatttttcaccacacatattccaagcaaatttccatattacatgcatttcaagaccttctcatttttagtat |
13032557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 32079370 - 32079295
Alignment:
| Q |
96 |
cttggggccaaggattttgaggaagggtacatggaggatcgacacccacgtggtatgatgtttatatcgcttaagg |
171 |
Q |
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| T |
32079370 |
cttgggaccaaggattttgagtaagggtacatggaggatcgacactcacgtgttaggatgtttacaccgcttaagg |
32079295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 22719080 - 22719155
Alignment:
| Q |
97 |
ttggggccaaggattttgaggaagggtacatggaggatcgacacccacgtggtatgatgtttatatcgcttaaggg |
172 |
Q |
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| T |
22719080 |
ttggagccaaggattttgaggaaggatacatggagaatcgacacccgcgtgctaacatgtttacatctcttaaggg |
22719155 |
T |
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