View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_13 (Length: 521)
Name: NF9359_low_13
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 71 - 506
Target Start/End: Original strand, 45083483 - 45083915
Alignment:
| Q |
71 |
gtttagtgttagtgggagaagttaaaatcacattctaatcactacgattcctatatccttgaactctattgtcgctttttatttttcttgaactgattca |
170 |
Q |
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| T |
45083483 |
gtttagtgttagtgggagaagttaaaatcacattctaatcactacgattcctatatccttgaactctattgtcgctttttatttttcttgaactgattca |
45083582 |
T |
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| Q |
171 |
aattttgatcattgtggccaattaaatagtagaagttaagccacagctctcatggtcttaaatttctaatgccttaatagttccttaaatcattttttag |
270 |
Q |
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| T |
45083583 |
aattttgatcattgcggccaattaaatag---aagttaagccacagctctcatggtcttaaatttctaatgccttaatagttccttcaatcattttttag |
45083679 |
T |
|
| Q |
271 |
ggaagggcttggagaggcatatgatggagacattgcatttgcaactgcccttgaaaattttggaggaggccatagtgatcctctatttgtaactttggga |
370 |
Q |
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| T |
45083680 |
ggaagggcttggagaggcatatgatggagacattgcatttgcaactgcccttgaaaattttggaggaggccatagtgatcctctatttgtaactttggga |
45083779 |
T |
|
| Q |
371 |
ggtaactgtgctatgcttatttagtctattccaatgttttctaattatcgtgcttaattcaaatattccatcaataaaattgtccttttttaactataac |
470 |
Q |
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| T |
45083780 |
ggtaactatgctatgcttatttagtctattccaatgttttctaattatcgtgcttaattcaaatattccatcaataaaattgtccttttttaactataac |
45083879 |
T |
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| Q |
471 |
ttttgatgtaaaataaatggtatgaccaggacctgt |
506 |
Q |
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| T |
45083880 |
ttttgatgtaaaaaaaatggtatgaccaggacctgt |
45083915 |
T |
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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 344
Target Start/End: Complemental strand, 6516485 - 6516410
Alignment:
| Q |
269 |
agggaagggcttggagaggcatatgatggagacattgcatttgcaactgcccttgaaaattttggaggaggccata |
344 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||| |||||| || ||||||| |
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| T |
6516485 |
agggaaggacttggagaggcatatgatggagacattgcatttgcaagtgccctagaaacttttggtgggggccata |
6516410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 353
Target Start/End: Original strand, 40198129 - 40198215
Alignment:
| Q |
267 |
ttagggaagggcttggagaggcatatgatggagacattgcatttgcaactgcccttgaaaattttggaggaggccatagtgatcctc |
353 |
Q |
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| T |
40198129 |
ttagggaagggcttggagagtcatatgacggggacattgcatttataagttcccttgatagttttggaggaggccatactgatcctc |
40198215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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