View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_15 (Length: 502)
Name: NF9359_low_15
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 3096328 - 3096820
Alignment:
| Q |
1 |
caaatttattttctactgttgtttccaaattgacattaatcatagcactttctcagacgttgcaataaggaggacaataaacttctacttccaaagattg |
100 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3096328 |
caaatttattttctattgttgtttccaaattgacatcaatcatagcactttctcaggcgttgcaataaggaggacaataaacttctacttccaaagattg |
3096427 |
T |
|
| Q |
101 |
gagtcagtcatctttggagtttc--------ttcaagtacttgtccgcagtgatccactgtcgaatttgtcatcaaattactcatattttatattggttt |
192 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3096428 |
gagtcagtcatctttggagtttcagacagttttcaagtacttgtccgcagtgatccactgtcgaatttgtcatcaagttactcatattttatattggttt |
3096527 |
T |
|
| Q |
193 |
tgtataatatgtctggttatcagcttcgttcaccttatgggaacaaaaaccactttggtgatcgtgtggcttctggtaatttcgcatttactacagctga |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3096528 |
tgtataatatgtctggttatcagcttcgttcaccttatgggaacaaacaccactttggtgatcgtgtggcttctggtaatttcgcatttactacagctga |
3096627 |
T |
|
| Q |
293 |
agctggtgactacacagcttgtttttccgtgccggatcagaaacccacaataactgtgaccattgattttgagtggagaactggggtggctgccaaggac |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3096628 |
agctggtgactacacagcttgtttttccgtgccggatcagaaacccacaataactgtgaccattgattttgagtggagaactggggtggctgccaaggac |
3096727 |
T |
|
| Q |
393 |
tggtataagattgcnnnnnnngatcagattgacgtaagtcttagtagtatagtactgtaatgtttgttgacatagcatcgagatgtgcatgat |
485 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3096728 |
tggtataagattgcaaaaaaagatcagattgacgtaagtcttagtagaatagtagtgtaatgtttgttgacatagcatcgagatgtgcatgat |
3096820 |
T |
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