View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9359_low_2 (Length: 745)

Name: NF9359_low_2
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9359_low_2
NF9359_low_2
[»] chr8 (3 HSPs)
chr8 (17-722)||(15230787-15231487)
chr8 (188-360)||(15249908-15250080)
chr8 (582-630)||(43485048-43485096)
[»] chr1 (2 HSPs)
chr1 (580-624)||(2247404-2247448)
chr1 (584-621)||(33910053-33910090)
[»] chr2 (3 HSPs)
chr2 (583-624)||(9122159-9122200)
chr2 (584-624)||(17451285-17451325)
chr2 (584-621)||(11813198-11813235)
[»] chr4 (4 HSPs)
chr4 (584-624)||(24979945-24979985)
chr4 (584-624)||(28038048-28038088)
chr4 (582-624)||(3763474-3763516)
chr4 (580-618)||(30891166-30891204)
[»] chr3 (1 HSPs)
chr3 (584-624)||(19547852-19547892)
[»] chr5 (3 HSPs)
chr5 (584-635)||(9604423-9604474)
chr5 (123-161)||(17821999-17822037)
chr5 (119-156)||(25537148-25537185)
[»] chr6 (1 HSPs)
chr6 (124-161)||(34672448-34672485)


Alignment Details
Target: chr8 (Bit Score: 586; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 17 - 722
Target Start/End: Original strand, 15230787 - 15231487
Alignment:
Q  17 gtgcaaactagccaaaaaatttatgttggtgcacccgtggcgaatgtatcttcctatggtggaccacaatttactatgagtctcaaccttacacaggtaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15230787 gtgcaaactagccaaaaaatttatgttggtgcacccgtggctaatgtatcttcctatggtggaccacaatttactatgagtctcaaccttacacaggtaa 15230886  T
Q  117 cctttatataaaatattgttcataatatacacgtattagcgcaatnnnnnnnnnnnnncggacacgttttgttgtgtttcaggatccagctactaagaac 216  Q
     ||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||| |||||||||||||||||||||||||||    
T  15230887 gctttatataaaatattgttcataatatacacgtattagcgcaataaaaaaaaa----cggacacgttttgtcgtgtttcaggatccagctactaagaac 15230982  T
Q  217 tggtggctaaaagcacaagacatggatgttggatattttccagcatcattattttctaataaactagattttgcaatgaaagctggttggactggtcata 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15230983 tggtggctaaaagcacaagacatggatgttggatattttccagcatcattattttctaataaactagattttgcaatgaaagctggttggactggtcata 15231082  T
Q  317 cacagttttttcttgatggtccaagtcctccaatgggttctggaattcttccagatggaaatcctcttcattcatgcttcatttcaaagatgtattttaa 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15231083 cacagttttttcttgatggtccaagtcctccaatgggttctggaattcttccagatggaaatcctcttcattcatgctacatttcaaagatgtattttaa 15231182  T
Q  417 ggatagatttagaaatgatcgtgcccctcttaaagatcagatgttagtgtatgctgataaccgtcgttgttatgatgcaaagtactatggttttgtggat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15231183 ggatagatttagaaatgatcgtgcccctcttaaagatcagatgctagtgtatgctgataaccgtcgttgttatgatgcaaagtactatggttttgtggat 15231282  T
Q  517 aataatttggaacgtgttatgatgtttgggggaccaggtggaaattgtggtctttgaaaaagtttaaagtaccggtacaccttattttgtgggtgtactg 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |||||| |    
T  15231283 aataatttggaacgtgttatgatgtttgggggaccaggtggaaattgtggtctttgaaaaagtttaaagtaccggtacacctcactttatgagtgtaccg 15231382  T
Q  617 tagaagttatcttaaaatagagagatccatgaatgaataaaataaattgaaagtggtggtggatgatattgttcttaatcactatagcttaatgaaagta 716  Q
    ||||||||  ||| ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||    
T  15231383 tagaagtttcctttaaatagagagatcca-gaatgaataaaataaattgaaagttgtagtggatgatattgttctcaatcactatagcttaataaaagta 15231481  T
Q  717 taattt 722  Q
    ||||||    
T  15231482 taattt 15231487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 188 - 360
Target Start/End: Original strand, 15249908 - 15250080
Alignment:
Q  188 ttgtgtttcaggatccagctactaagaactggtggctaaaagcacaagacatggatgttggatattttccagcatcattattttctaataaactagattt 287  Q
    |||||||||||||||||   ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||      
T  15249908 ttgtgtttcaggatccaaacactaagaactggtggctaagagcacaagatatggatgttggatattttccagcaacattattttccaataaactagatca 15250007  T
Q  288 tgcaatgaaagctggttggactggtcatacacagttttttcttgatggtccaagtcctccaatgggttctgga 360  Q
    |||||  |||| ||||||||| ||||| |||||| |||||  |||||| || |||||||||||||||||||||    
T  15250008 tgcaagtaaaggtggttggacaggtcaaacacagatttttggtgatggccctagtcctccaatgggttctgga 15250080  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 582 - 630
Target Start/End: Complemental strand, 43485096 - 43485048
Alignment:
Q  582 aaagtaccggtacaccttattttgtgggtgtactgtagaagttatctta 630  Q
    ||||||||||||||||||| |||| |||||||| ||||||||| |||||    
T  43485096 aaagtaccggtacaccttaatttgcgggtgtaccgtagaagttctctta 43485048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 580 - 624
Target Start/End: Original strand, 2247404 - 2247448
Alignment:
Q  580 ttaaagtaccggtacaccttattttgtgggtgtactgtagaagtt 624  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||    
T  2247404 ttaaagtaccggtacaccttaatttgtgggtgtaccgtagaagtt 2247448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 621
Target Start/End: Original strand, 33910053 - 33910090
Alignment:
Q  584 agtaccggtacaccttattttgtgggtgtactgtagaa 621  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  33910053 agtaccggtacaccttaatttgtgggtgtaccgtagaa 33910090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 624
Target Start/End: Complemental strand, 9122200 - 9122159
Alignment:
Q  583 aagtaccggtacaccttattttgtgggtgtactgtagaagtt 624  Q
    ||||||||||||||||||||||||| |||||| |||||||||    
T  9122200 aagtaccggtacaccttattttgtgagtgtaccgtagaagtt 9122159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 624
Target Start/End: Complemental strand, 17451325 - 17451285
Alignment:
Q  584 agtaccggtacaccttattttgtgggtgtactgtagaagtt 624  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  17451325 agtaccggtacaccttattttgtgagtgtaccgtagaagtt 17451285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 621
Target Start/End: Complemental strand, 11813235 - 11813198
Alignment:
Q  584 agtaccggtacaccttattttgtgggtgtactgtagaa 621  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  11813235 agtaccggtacaccttaatttgtgggtgtaccgtagaa 11813198  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 624
Target Start/End: Complemental strand, 24979985 - 24979945
Alignment:
Q  584 agtaccggtacaccttattttgtgggtgtactgtagaagtt 624  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  24979985 agtaccggtacaccttattttgtgagtgtaccgtagaagtt 24979945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 624
Target Start/End: Original strand, 28038048 - 28038088
Alignment:
Q  584 agtaccggtacaccttattttgtgggtgtactgtagaagtt 624  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  28038048 agtaccggtacaccttaatttgtgggtgtaccgtagaagtt 28038088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 582 - 624
Target Start/End: Original strand, 3763474 - 3763516
Alignment:
Q  582 aaagtaccggtacaccttattttgtgggtgtactgtagaagtt 624  Q
    ||||||||| |||||||||||||||| |||||| |||||||||    
T  3763474 aaagtaccgatacaccttattttgtgagtgtacggtagaagtt 3763516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 580 - 618
Target Start/End: Complemental strand, 30891204 - 30891166
Alignment:
Q  580 ttaaagtaccggtacaccttattttgtgggtgtactgta 618  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  30891204 ttaaagtaccggtacaccttaatttgtggatgtactgta 30891166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 624
Target Start/End: Original strand, 19547852 - 19547892
Alignment:
Q  584 agtaccggtacaccttattttgtgggtgtactgtagaagtt 624  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  19547852 agtaccggtacaccttaatttgtgggtgtaccgtagaagtt 19547892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 584 - 635
Target Start/End: Complemental strand, 9604474 - 9604423
Alignment:
Q  584 agtaccggtacaccttattttgtgggtgtactgtagaagttatcttaaaata 635  Q
    ||||||||||||||| |||||||| |||||| ||||||||| ||| ||||||    
T  9604474 agtaccggtacacctcattttgtgagtgtaccgtagaagttctctaaaaata 9604423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 17822037 - 17821999
Alignment:
Q  123 tataaaatattgttcataatatacacgtattagcgcaat 161  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  17822037 tataaaatattgttaataatctacacgtattagcgcaat 17821999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 25537148 - 25537185
Alignment:
Q  119 tttatataaaatattgttcataatatacacgtattagc 156  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  25537148 tttatataaaatattgttcataatttacacgtgttagc 25537185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 34672485 - 34672448
Alignment:
Q  124 ataaaatattgttcataatatacacgtattagcgcaat 161  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  34672485 ataaaatattgttcataatttacacgcattagcgcaat 34672448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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