View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9359_low_20 (Length: 414)
Name: NF9359_low_20
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Original strand, 42826845 - 42827235
Alignment:
| Q |
17 |
agttattacctttaacagggtcaatgtgtgaaatatcaagttgatcaaattcaatctcactctcagaatcttcactcttgttcaaattgaaccaaaaggg |
116 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42826845 |
agttattacctttaataggatcaatttgtgaaatatcaagttgatcaaattcaatctcactctcagaatcttcactcttgttcaaattgaaccaaaaggg |
42826944 |
T |
|
| Q |
117 |
tgttttggcagacaagcaaaaacggtcaccaagttccaaatgacccatttcgaatttcttgaagatcttaagcgttttgtcattgttcttcaaaatccag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42826945 |
tgttttggcagacaagcaaaaacggtcaccaagttccaaatgacccatttcgaatttcttgaagatcttaagcgttttgtcattgttcttcaaaacccag |
42827044 |
T |
|
| Q |
217 |
atggggtttcttccaatgacttgaaatgaaaccttaggaggttctgaatcagactcgttgttgagttggaacgaaacgtgacggcgagaaacagtgtggt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42827045 |
atggggtttcttccaatgacttgaaatgaaaccttaggaggttctgaatcagactcgttgttgagttggaacgaaacgtgacggcgagaaacagtgtggt |
42827144 |
T |
|
| Q |
317 |
cttttgtgttgaaaccacaacctcgtccgaacagtgctttgtcgctgctttgtaaagagaatttggaaccatcttcgccttcgaactccat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42827145 |
cttttgtgttgaaaccacaacctcgtccgaacagtgctttgtcgctgctttgtaaagagaatttggaaccatcttcgccttcgaactccat |
42827235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University