View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_23 (Length: 411)
Name: NF9359_low_23
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 48495206 - 48494879
Alignment:
| Q |
1 |
tcaatagacacttcagtattatctggaccggaaggtaatgtggtccatttcaagctaaaatcacctacttgagcttgaaaaatctaagagtgacaaccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48495206 |
tcaatagacacttcagtattatctggaccggaaggtaatgtggtccatttcaagctaaaatcacctacttgagcttgaaaaatctaagagtgacaaccat |
48495107 |
T |
|
| Q |
101 |
cactttgattattttttctgttacaccattctattcctttccaattcatctcactatcattttcttttatg-caatggaaaatggagaatgggttatggt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
48495106 |
cactttgattattttttctgttacaccattctattcctttccaattcatctcactatcattttcttttctgtcaatggaaaatggagaatgggttatggt |
48495007 |
T |
|
| Q |
200 |
gcatagccctccacacagtggcggaaccacgtggggaca-gggatggccatggtcgtcccattatttgtgggaaattaccaaaatatccttgagttaata |
298 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
48495006 |
gcatagccctccacacagtggcggaaccacgtggggacaggggatggccatgatcgtcccattatttgtggaaaattaccaaaatacccttgagttaata |
48494907 |
T |
|
| Q |
299 |
tgaaatttacaaccatgccaccctcagt |
326 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
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| T |
48494906 |
tgaaatttacaaccatgccaccttcagt |
48494879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 326 - 401
Target Start/End: Complemental strand, 48494854 - 48494779
Alignment:
| Q |
326 |
tactctggcgacgaccacccaagttcacccttcttctctctggactaatccggcacagcgacgccctccatctctg |
401 |
Q |
| |
|
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|
| T |
48494854 |
tactctggcgatgaccacccaagttcacccttcttctctctggactaatccggcgcagcgacgccctccatctctg |
48494779 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 51285246 - 51285356
Alignment:
| Q |
215 |
cagtggcggaaccacgtggggacaggg-atggccatggtcgtcccattatttgtgggaaattaccaaaatatccttgagttaatatgaaatttacaacca |
313 |
Q |
| |
|
|||||||||| |||||||||||||||| | |||||||| | |||||||||| || ||||||||||||||| |||| ||||||||| |||| |||||||| |
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| T |
51285246 |
cagtggcggagccacgtggggacaggggaaggccatggccaccccattatttttgagaaattaccaaaatacccttaagttaatataaaatctacaacca |
51285345 |
T |
|
| Q |
314 |
tgccaccctca |
324 |
Q |
| |
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||||||||||| |
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| T |
51285346 |
tgccaccctca |
51285356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 47189293 - 47189368
Alignment:
| Q |
240 |
ggatggccatggtcgtcccattatttgtgggaaattaccaaaatatccttgagttaatatgaaatttacaaccatg |
315 |
Q |
| |
|
|||||||||||| | |||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
47189293 |
ggatggccatggcctacccattatttttgggaaattaccaaaatacccttgagttaatatgaaatatacaaccatg |
47189368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 318
Target Start/End: Original strand, 47508231 - 47508340
Alignment:
| Q |
210 |
ccacacagtggcggaaccacgtggggacaggg-atggccatggtcgtcccatta-tttgtgggaaattaccaaaatatccttgagttaatatgaaattta |
307 |
Q |
| |
|
|||| |||||||||| ||||||| |||||||| |||||||||| | ||||| | ||||||| |||||||||||||| ||||| ||||| ||||| |||| |
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|
| T |
47508231 |
ccacccagtggcggagccacgtgaggacaggggatggccatggccaccccatcaatttgtgg-aaattaccaaaatacccttgggttaaaatgaatttta |
47508329 |
T |
|
| Q |
308 |
caaccatgcca |
318 |
Q |
| |
|
||||||||||| |
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|
| T |
47508330 |
caaccatgcca |
47508340 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 32635362 - 32635431
Alignment:
| Q |
255 |
tcccattatttgtgggaaattaccaaaatatccttgagttaatatgaaatttacaaccatgccaccctca |
324 |
Q |
| |
|
||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32635362 |
tcccattatttatgagaaattaccaaaatacccttgagttaatatgaaatttacaaccatgccaccctca |
32635431 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 32635459 - 32635511
Alignment:
| Q |
327 |
actctggcgacgaccacccaagttcacccttcttctctctggactaatccggc |
379 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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|
| T |
32635459 |
actctggcgacgaccacgcaagttcactcttcttctctctggactaatccggc |
32635511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 215 - 318
Target Start/End: Original strand, 39312534 - 39312638
Alignment:
| Q |
215 |
cagtggcggaaccacgtggggaca-gggatggccatggtcgtcccatt-atttgtgggaaattaccaaaatatccttgagttaatatgaaatttacaacc |
312 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||||||||||| | |||||| |||||| |||||||||||||||| ||||| ||||| ||||| ||||||||| |
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|
| T |
39312534 |
cagtggcggagccacgtgaggacatgggatggccatggccaccccattaatttgt-ggaaattaccaaaatacccttgggttaaaatgaattttacaacc |
39312632 |
T |
|
| Q |
313 |
atgcca |
318 |
Q |
| |
|
|||||| |
|
|
| T |
39312633 |
atgcca |
39312638 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 318
Target Start/End: Original strand, 92308 - 92412
Alignment:
| Q |
215 |
cagtggcggaaccacgtggggacaggg-atggccatggtcgtcccattatttgtgggaaattaccaaaatatccttgagttaatatgaaatttacaacca |
313 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||||| | ||||||| || || |||||||| | |||| | |||| |||| | || |||||||||| |
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|
| T |
92308 |
cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataatacctttgatataatcttaattttacaacca |
92407 |
T |
|
| Q |
314 |
tgcca |
318 |
Q |
| |
|
||||| |
|
|
| T |
92408 |
tgcca |
92412 |
T |
|
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