View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_24 (Length: 405)
Name: NF9359_low_24
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 45 - 388
Target Start/End: Original strand, 26315575 - 26315926
Alignment:
| Q |
45 |
gagggttagataatatttatgtcatataaacacaatgtagattatattatattatatta-----gaatagattagagggggcaaagagatatatcatttg |
139 |
Q |
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| T |
26315575 |
gagggttagttaatatttatgtcatataaacacaatgtagattatattatattatattatattagaatagattagagggggcaaaaagatatatcatttg |
26315674 |
T |
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| Q |
140 |
nnnnnnn-tagagcataaaacacaaatgttcgagtaaatcaaaggcttaccatgagatagttcaatggcatgatgggaaagagttgattgaacaaatcat |
238 |
Q |
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| T |
26315675 |
aaaaaaaatagagcataaaacacaaatgttcgagtaaatcaaaggcttaccatgagatagttcaatggcatggtgggaaagagttgattgaacaaatcat |
26315774 |
T |
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| Q |
239 |
tgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaaccactacaataatagccata--atggtgaca |
336 |
Q |
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| T |
26315775 |
tgaaacctaattcatcaacaacccagttatcgctgtcacattcaataatggttttgtcaaagtcgaaaaccactacaatactagccataatatggtgaca |
26315874 |
T |
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| Q |
337 |
gagaaatattttgtttgtttttgagaaaaccaagaatttattatactacaat |
388 |
Q |
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| T |
26315875 |
aagaaatattttgtttgtttttaaaaaaaccaagaatttattatactgcaat |
26315926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 155 - 329
Target Start/End: Original strand, 43110799 - 43110973
Alignment:
| Q |
155 |
aaaacacaaatgttcgagtaaatcaaaggcttaccatgagatagttcaatggcatgatgggaaagagttgattgaacaaatcattgaaacctaattcatc |
254 |
Q |
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| T |
43110799 |
aaaacacaaatcttcgaacatataaaaatcttaccatgagattgttccatggcatggtgggaacaagttcattgaacaaatcagtgaaacccaattcatc |
43110898 |
T |
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| Q |
255 |
aacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaaccactacaataatagccataat |
329 |
Q |
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| T |
43110899 |
aacaacccagttatcactgtcacattcaactatggttttgtcaaagtcaaaaaccacaacaatattagccataat |
43110973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 186 - 308
Target Start/End: Complemental strand, 5269026 - 5268904
Alignment:
| Q |
186 |
taccatgagatagttcaatggcatgatgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgata |
285 |
Q |
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| T |
5269026 |
taccatgagagaattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaacaacccaattatcactatcacaatcaatt |
5268927 |
T |
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| Q |
286 |
atggttttgtcaaagtcgaaaac |
308 |
Q |
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| T |
5268926 |
atggttttatcgaagtcgaaaac |
5268904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 5249791 - 5249659
Alignment:
| Q |
186 |
taccatgagatagttcaatggcatgatgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgata |
285 |
Q |
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| T |
5249791 |
taccatgagagaattccaaggcatagtgggaaggagctgattgaacaaatcagtgaaacccaattcatcaataacccaattatcactgtcacaatcaatt |
5249692 |
T |
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| Q |
286 |
atggttttgtcaaagtcgaaaaccactacaata |
318 |
Q |
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| T |
5249691 |
atggttttatcaaaatcaaaaactacaacaata |
5249659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 308
Target Start/End: Original strand, 5276756 - 5276850
Alignment:
| Q |
214 |
ggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaac |
308 |
Q |
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| T |
5276756 |
ggaaggagttgattgaacaaatcagtgaaacccaattcatcaatcaaccaattatcactgtcacaatcaatgatcgttttgtcaaaatcaaaaac |
5276850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 5272783 - 5272878
Alignment:
| Q |
212 |
tgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaa |
307 |
Q |
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| T |
5272783 |
tgggaaggagctgattgaacaaatcggtgaaacccaattcatcaatcaaccaattatcactatcacaatcaatgatggttttgtcaaagtcaaaaa |
5272878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 19569227 - 19569168
Alignment:
| Q |
219 |
gagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcaca |
278 |
Q |
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| T |
19569227 |
gagttgattgaacaaatcgatgaaacctaattcatcaacatcccaattatcactatcaca |
19569168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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