View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_29 (Length: 363)
Name: NF9359_low_29
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 15872264 - 15872446
Alignment:
| Q |
20 |
acaatgtggtaagatatttttgagataactaaaacttccatttcaaaaagaactaaccgtaagctcattcaacaatacttttgatcaagtaaatctcaca |
119 |
Q |
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| T |
15872264 |
acaatgtggtaagatatttttgagataactaaaacttccattttaaaaagaactaactgtaagctcattcaacaatacttttgatcaagtaagtctcaca |
15872363 |
T |
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| Q |
120 |
tattatgaataaaatgaatgtttgaagctccaaacactttctgacatgcataattgacatgcataaaccctttccctatttcc |
202 |
Q |
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| T |
15872364 |
tattatgaataaaatgaatgtttgaagctccaaacactttctgacatgcataattgacatgcataaaccctttccctatttcc |
15872446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 15872515 - 15872588
Alignment:
| Q |
271 |
gagatatttgtaaatgtatttgcaattttaatacaacaagagattaatatgacaacaaagtaaacatttagaga |
344 |
Q |
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| T |
15872515 |
gagatacttctagatgtatttgcaattttaatacaacaagagattaatatgacaacaaagtgaacatttagaga |
15872588 |
T |
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