View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_33 (Length: 356)
Name: NF9359_low_33
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 339
Target Start/End: Complemental strand, 7175739 - 7175409
Alignment:
| Q |
9 |
tggtgttaactgtatgtgtttcagcaccaattacagacctgtcaaacctgttcctgcaactgtttgctgctttccacccatgcaacaactgttgtgcacg |
108 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||| |
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| T |
7175739 |
tggtgttaaccgtatgtgtttcagcaccaattacagacctgtcaaacctgttcctgcaattgtttgctgctttccacccatgcagcaactgatgtgcacg |
7175640 |
T |
|
| Q |
109 |
ctcaacaattgactggctgctctcgggcatattttgccaaacttgaatattccgacttttccacaagccccacactaaagtaacaaataactgaatttta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7175639 |
ctcaacaattgactggctgctctcgggcatattttgccaaacttgaatattccgacttttccacaagctccacactaaagtaacaaataactgaatttta |
7175540 |
T |
|
| Q |
209 |
gtatgtggcagattttgcagtaaggcggacactatatctgctgctgtgttatttgtttacatcgccacatatatatcgtttgagaggtgactgtcccgcc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7175539 |
gtatgtggcagattttgcagtaaggcggacactatatctgctgctgtgttatttgtttgcatcgccacatatatatcgtttgagaggtgactgtcccgcc |
7175440 |
T |
|
| Q |
309 |
aaacgctcctcgctctttgacaatcaaacag |
339 |
Q |
| |
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||| ||||||||||||||||||||||||||| |
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| T |
7175439 |
aaatgctcctcgctctttgacaatcaaacag |
7175409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 338
Target Start/End: Complemental strand, 26622281 - 26621952
Alignment:
| Q |
9 |
tggtgttaactgtatgtgtttcagcaccaattacagacctgtcaaacctgttcctgcaactgtttgctgctttccacccatgcaacaactgttgtgcacg |
108 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |||||| |||||||| |
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| T |
26622281 |
tggtgttaaccgtatttgtttcagcaccaattacagacctgtcaaacctgttcctgcacctgtttgctgttgtccacccatgcagcaactgatgtgcacg |
26622182 |
T |
|
| Q |
109 |
ctcaacaattgactggctgctctcgggcatattttgccaaacttgaatattccgacttttccacaagccccacactaaagtaacaaataactgaatttta |
208 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
26622181 |
ctcaacaattgactggctgctctcggacatattttgccaaacttgaatattccagcttttccacaagctccacactaaagtaacaaataactggatttta |
26622082 |
T |
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| Q |
209 |
gtatgtggcagattttgcagtaaggcggacactatatctgctgctgtgttatttgtttacatcgccacatatatatcgtttgagaggtgactgtcccgcc |
308 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26622081 |
gtatgtggcagattttgtagtaaggcaaacactatatctgctgatgtgttatttgtttgcatcgccacatatatatcgtttgagaggtgactgtcccgcc |
26621982 |
T |
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| Q |
309 |
aaacgctcctcgctctttgacaatcaaaca |
338 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
26621981 |
aaacgctcctcgctctttgacaatcaaaca |
26621952 |
T |
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