View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_35 (Length: 351)
Name: NF9359_low_35
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 15 - 343
Target Start/End: Original strand, 6105773 - 6106101
Alignment:
| Q |
15 |
agaaataacaaaattaagtccnnnnnnnnttgagataatatcttcacctttctggttgacaataacctttcaggaccatgcagctttgaactaccttcat |
114 |
Q |
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| T |
6105773 |
agaaataacaaaattaagtcaaaaaaaaattgagataatatcttcacctttctggttgacaataacctttcaggaccatgcagctttgaactaccttcat |
6105872 |
T |
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| Q |
115 |
gttcatcacaagaagtcaattcatcagtagcctctttaacatgtatcctctcaccatcatataaggaaactaaagattgcttcgcgtcgtattcaggtga |
214 |
Q |
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| T |
6105873 |
gttcatcacaagaagtcaattcatcagtagcctctttaacatgtatcctctcaccatcatataaggaaacaaaagattgcttcgcgtcgtattcaggtga |
6105972 |
T |
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| Q |
215 |
atcgtcagagaggcgaaccggacatccatctggattgaggccttgttcagtagtggagcagagtttatcctgaacctcagccccatctgtagattcatct |
314 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6105973 |
atcgtcagagagacgaaccggacatccatctggattgaggccttgttcagtagtggagcagagtttatcctgaacctcagccccatctgtagattcatct |
6106072 |
T |
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| Q |
315 |
ttactgcagtcatcgagtaaagtattatc |
343 |
Q |
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| T |
6106073 |
ttactgcagtcatcaagtaaagtattatc |
6106101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 343
Target Start/End: Original strand, 6106193 - 6106335
Alignment:
| Q |
201 |
tcgtattcaggtgaatcgtcagagaggcgaaccggacatccatctggattgaggccttgttcagtagtggagcagagtttatcctgaacctcagccccat |
300 |
Q |
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| T |
6106193 |
tcgtattcaggtgaatcatctgagcgacaaaccagatacccatcaggattgagtccatgttcattagtggagcaggagttatatagaatctcagcaacag |
6106292 |
T |
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| Q |
301 |
ctgtagattcatctttactgcagtcatcgagtaaagtattatc |
343 |
Q |
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| T |
6106293 |
ctgtatattcatcttcactgcaatcagtgagtaaagtattatc |
6106335 |
T |
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