View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_38 (Length: 336)
Name: NF9359_low_38
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_38 |
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| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: scaffold0283 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 20692 - 20387
Alignment:
| Q |
19 |
catgggtccttcctactattgcagccaatcccagatcaccaatttttacctataaaaacccagagtgaaaatctaatttttcagaacttatcaaatcaca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20692 |
catgggtccttcctactattgcagccaatcccagatcaccaatttttacctataaaaacccagagtgaaaatctaatttttcagaacttatcaaatcaca |
20593 |
T |
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| Q |
119 |
aaatatgttttaatgtaagaattgacattgagttctagatcttctttcaacctaagcgcacaaatcaggatgcaacttcactttaaaatattaagtgagt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20592 |
aaatatgttttaatgtaagaattgacattgagttctagatcttctttcaacctaagtgcacaaatcaggatgcaacttcactttaaaatataaagtgagt |
20493 |
T |
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| Q |
219 |
aatatcgactattaatgattaaaccaatgattgattttatatgcatatgcaaaacaatcatggatatgttgaaacatcatctcttcattttcttacttta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20492 |
aatatcgactattaatgattaaaccaatgattgattttatatgcatatgcaaaacaatcatggatatgttgaaacatcatctcttcattttcttacttta |
20393 |
T |
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| Q |
319 |
ttctct |
324 |
Q |
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|||||| |
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| T |
20392 |
ttctct |
20387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 42726718 - 42726413
Alignment:
| Q |
19 |
catgggtccttcctactattgcagccaatcccagatcaccaatttttacctataaaaacccagagtgaaaatctaatttttcagaacttatcaaatcaca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42726718 |
catgggtccttcctactattgcagccaatcccagatcaccaatttttacctataaaaacccagagtgaaaatctaatttttcagaacttatcaaatcaca |
42726619 |
T |
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| Q |
119 |
aaatatgttttaatgtaagaattgacattgagttctagatcttctttcaacctaagcgcacaaatcaggatgcaacttcactttaaaatattaagtgagt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42726618 |
aaatatgttttaatgtaagaattgacattgagttctagatcttctttcaacctaagtgcacaaatcaggatgcaacttcactttaaaatataaagtgagt |
42726519 |
T |
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| Q |
219 |
aatatcgactattaatgattaaaccaatgattgattttatatgcatatgcaaaacaatcatggatatgttgaaacatcatctcttcattttcttacttta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42726518 |
aatatcgactattaatgattaaaccaatgattgattttatatgcatatgcaaaacaatcatggatatgttgaaacatcatctcttcattttcttacttta |
42726419 |
T |
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| Q |
319 |
ttctct |
324 |
Q |
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|||||| |
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| T |
42726418 |
ttctct |
42726413 |
T |
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