View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9359_low_39 (Length: 330)

Name: NF9359_low_39
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9359_low_39
NF9359_low_39
[»] chr2 (5 HSPs)
chr2 (1-329)||(44029068-44029396)
chr2 (240-325)||(6727643-6727728)
chr2 (1-151)||(36552599-36552748)
chr2 (240-323)||(2207690-2207773)
chr2 (240-312)||(1468185-1468257)
[»] chr7 (4 HSPs)
chr7 (1-325)||(551419-551742)
chr7 (252-325)||(6343506-6343579)
chr7 (240-319)||(45165431-45165510)
chr7 (240-323)||(39694660-39694743)
[»] chr8 (6 HSPs)
chr8 (18-324)||(37718815-37719120)
chr8 (240-325)||(4310700-4310785)
chr8 (238-326)||(25891253-25891341)
chr8 (244-303)||(42649412-42649471)
chr8 (45-149)||(24084496-24084599)
chr8 (60-148)||(25891076-25891163)
[»] chr4 (5 HSPs)
chr4 (1-195)||(47129583-47129774)
chr4 (240-325)||(40688256-40688341)
chr4 (240-325)||(54684799-54684884)
chr4 (240-323)||(19163045-19163128)
chr4 (240-303)||(43127478-43127541)
[»] chr6 (5 HSPs)
chr6 (240-325)||(15602513-15602598)
chr6 (238-325)||(18588539-18588626)
chr6 (238-325)||(7956534-7956621)
chr6 (113-153)||(7956690-7956729)
chr6 (96-153)||(29055565-29055622)
[»] chr5 (2 HSPs)
chr5 (240-324)||(36255968-36256052)
chr5 (1-49)||(17674040-17674088)
[»] chr1 (2 HSPs)
chr1 (240-325)||(30712745-30712830)
chr1 (288-329)||(39477386-39477427)
[»] scaffold0351 (1 HSPs)
scaffold0351 (240-323)||(12860-12943)
[»] scaffold0024 (1 HSPs)
scaffold0024 (238-283)||(87110-87155)
[»] scaffold0750 (1 HSPs)
scaffold0750 (240-325)||(6240-6325)
[»] scaffold0124 (1 HSPs)
scaffold0124 (240-325)||(22602-22687)
[»] chr3 (3 HSPs)
chr3 (240-325)||(6986091-6986176)
chr3 (287-325)||(25783734-25783772)
chr3 (240-325)||(8130140-8130225)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 44029396 - 44029068
Alignment:
Q  1 ccacctggccacagcctgaaacacactgacacgcctcggtatcaataacaccacgcaacgccaaatttgttttggtaggcaagcgatcacgaatcagtct 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||  ||||||||    
T  44029396 ccacctgaccacagcctgaaacacactgacacgcctcggtatcaataacaccacgcagcgccaaatttgttttggtaggcaggcgatcacagatcagtct 44029297  T
Q  101 ccaaacaaaaattgacacctttagggggaacctgtttatgccaaattaaatcgttgttctgcacaacttgaggattctcctgagttgtgagcatatcatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||     
T  44029296 ccaaacaaaaattgacacctttagggggaacctgtttatgccaaattaaatcgttgttctgcacaactcgaggattctcctgagctgtgagcatatcata 44029197  T
Q  201 caccccacaaacagaatagcctcctgaagggtccaacaaccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacac 300  Q
     ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44029196 taccccacgaacagaatagcctccagaagggttcaacaaccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagacagtaataacctacac 44029097  T
Q  301 tccgctaaaagatcctcctcccacaacct 329  Q
    |||||||||||||||||||||||||||||    
T  44029096 tccgctaaaagatcctcctcccacaacct 44029068  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 240 - 325
Target Start/End: Complemental strand, 6727728 - 6727643
Alignment:
Q  240 ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctcccaca 325  Q
    ||||||||| |||||| |||||||||||||||| ||||||| ||   ||||||||||||||||||| | ||| |||||||||||||    
T  6727728 ccactgccacacatcataagaaagaggctgcaaagaaacattagcaagtaataacctacactccgcaagaagctcctcctcccaca 6727643  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 36552599 - 36552748
Alignment:
Q  1 ccacctggccacagcctgaaacacactgacacgcctcggtatcaataacaccacgcaacgccaaatttgttttggtaggcaagcgatcacgaatcagtct 100  Q
    |||||||||| || || ||||| |||  |||| |||| | |||||||||||| ||| | |||||||||| ||| ||||| | |||||||| ||  |  |     
T  36552599 ccacctggccgcatccagaaacgcacaaacacacctctgcatcaataacacctcgcgatgccaaatttgattttgtaggaaggcgatcacaaagaaaccg 36552698  T
Q  101 ccaaacaaaaattgacacctttagggggaacctgtttatgccaaattaaat 151  Q
    |||| ||||||| |||||||||| | ||||||||||||||| |||||||||    
T  36552699 ccaaccaaaaatagacaccttta-gaggaacctgtttatgctaaattaaat 36552748  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 2207773 - 2207690
Alignment:
Q  240 ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctccca 323  Q
    ||||||||| |||||| ||||||||||||| || ||||||| ||   ||||||||||||||||| | |  || |||||||||||    
T  2207773 ccactgccacacatcataagaaagaggctgtaaagaaacattagcaagtaataacctacactccacaaggaggtcctcctccca 2207690  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 1468185 - 1468257
Alignment:
Q  240 ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaaga 312  Q
    |||||| || |||||| |||||||||||||||| ||||||| ||   |||||| |||||||||| ||| ||||    
T  1468185 ccactgtcacacatcataagaaagaggctgcaaagaaacattagcaagtaatagcctacactcctctataaga 1468257  T

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Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 551742 - 551419
Alignment:
Q  1 ccacctggccacagcctgaaacacactgacacgcctcggtatcaataacaccacgcaacgccaaatttgttttggtaggcaagcgatcacgaatcagtct 100  Q
    ||||||||||||| || |||||||||||||| ||||| || |||||||  || |||  |  |||||||| ||||||||||||||||||||| ||||| |     
T  551742 ccacctggccacaaccagaaacacactgacaagcctccgtgtcaataattccccgcgccctcaaatttgatttggtaggcaagcgatcacggatcagccg 551643  T
Q  101 ccaaacaaaaattgacacctttagggggaacctgtttatgccaaattaaatcgttgttctgcacaacttgaggattctcctgagttgtgagcatatcatg 200  Q
    |||| ||||||||||||||||||  || ||||||||||||||||||||||||    |||| || ||| |||| |  ||||||| |||||||||||||||     
T  551642 ccaagcaaaaattgacacctttaaagg-aacctgtttatgccaaattaaatcaacattctacaaaacctgagaagactcctgatttgtgagcatatcata 551544  T
Q  201 caccccacaaacagaatagcctcctgaagggtccaacaaccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacac 300  Q
     ||||||| |||||| || ||| | |||||||||   |||||||||||||||||||| ||| |||||||||| |||||||||||  ||||||||||||||    
T  551543 taccccacgaacagagtaaccttcggaagggtccggtaaccactgccaaacatcaaacgaaggaggctgcaaagaaacatcagaaagtaataacctacac 551444  T
Q  301 tccgctaaaagatcctcctcccaca 325  Q
    ||||||||||| |||||||||||||    
T  551443 tccgctaaaagttcctcctcccaca 551419  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 252 - 325
Target Start/End: Complemental strand, 6343579 - 6343506
Alignment:
Q  252 atcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctcccaca 325  Q
    ||||||||||||||||||||| ||||||| ||   |||| |||||||||||| ||||||| |||||||||||||    
T  6343579 atcaaaagaaagaggctgcaaagaaacattagtaagtaacaacctacactcctctaaaagctcctcctcccaca 6343506  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 45165510 - 45165431
Alignment:
Q  240 ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcct 319  Q
    ||||||||| |||||| |||||||||||||||| ||||||| ||   ||||||||||||||||||| | ||| |||||||    
T  45165510 ccactgccacacatcataagaaagaggctgcaaagaaacattagcaagtaataacctacactccgcaagaagctcctcct 45165431  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 39694660 - 39694743
Alignment:
Q  240 ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctccca 323  Q
    ||||||||| |||||| |||||||||||||||| ||||||| ||   ||||||||||||||||| | |  || |||||||||||    
T  39694660 ccactgccacacatcataagaaagaggctgcaaagaaacattagcaagtaataacctacactccacaaggaggtcctcctccca 39694743  T

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Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 37718815 - 37719120
Alignment:
Q  18 gaaacacactgacacgcctcggtatcaataacaccacgcaacgccaaatttgttttggtaggcaagcgatcacgaatcagtctccaaacaaaaattgaca 117  Q
    |||||||||| ||||||||| | ||||||||| || |||  |  | |||||| ||||||||| ||||||||||| | ||| | |||| ||||||||||||    
T  37718815 gaaacacactaacacgcctctgcatcaataactccccgcgccctcgaatttgatttggtaggtaagcgatcacggagcagccgccaagcaaaaattgaca 37718914  T
Q  118 cctttagggggaacctgtttatgccaaattaaatcgttgttctgcacaacttgaggattctcctgagttgtgagcatatcatgcaccccacaaacagaat 217  Q
    |||||| ||| |||||||||||||| ||||||||||   ||||||| ||| |||  | |||||||||||||||||||||||| ||| |||  |||||| |    
T  37718915 cctttaaggg-aacctgtttatgcctaattaaatcggcattctgcaaaacctgaaaagtctcctgagttgtgagcatatcatacactccatgaacagagt 37719013  T
Q  218 agcctcctgaagggtccaacaaccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctc 317  Q
    ||||| | |||||| ||   ||||| ||||||||| || | |||||||||||||| ||||||||| |   |||||||| |||||||||||||||||||||    
T  37719014 agccttcggaagggcccggtaaccagtgccaaacaccatacgaaagaggctgcaaagaaacatcataaaataataaccgacactccgctaaaagatcctc 37719113  T
Q  318 ctcccac 324  Q
    |||||||    
T  37719114 ctcccac 37719120  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 325
Target Start/End: Complemental strand, 4310785 - 4310700
Alignment:
Q  240 ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctcccaca 325  Q
    ||||||||| |||||| |||||| ||||||||| |||| || ||   ||||||||||||||||||| | ||| |||||||||||||    
T  4310785 ccactgccacacatcataagaaataggctgcaaagaaatattagcaagtaataacctacactccgcaagaagctcctcctcccaca 4310700  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 326
Target Start/End: Original strand, 25891253 - 25891341
Alignment:
Q  238 aaccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctcccacaa 326  Q
    ||||||||||| |||||| ||||||||| |||||| ||||||| |     ||| | |||||||||| ||||||||||||||||||||||    
T  25891253 aaccactgccacacatcataagaaagagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcctcctcccacaa 25891341  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 42649412 - 42649471
Alignment:
Q  244 tgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactcc 303  Q
    ||||| |||||| |||||||||||||||| ||||||||||   |||||||||||||||||    
T  42649412 tgccacacatcataagaaagaggctgcaaagaaacatcagcaagtaataacctacactcc 42649471  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 24084496 - 24084599
Alignment:
Q  45 ataacaccacgcaacgccaaatttgttttggtaggcaagcgatcacgaatcagtctccaaacaaaaattgacacctttagggggaacctgtttatgccaa 144  Q
    |||||||||| |  ||||||||||| ||| || ||||| | |||||||| ||| | |||  |||||||||||||| |||   ||||||| ||||||||||    
T  24084496 ataacaccacactccgccaaatttgatttagttggcaatctatcacgaagcagccgccattcaaaaattgacacc-ttaaacggaacctatttatgccaa 24084594  T
Q  145 attaa 149  Q
    |||||    
T  24084595 attaa 24084599  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 25891076 - 25891163
Alignment:
Q  60 gccaaatttgttttggtaggcaagcgatcacgaatcagtctccaaacaaaaattgacacctttagggggaacctgtttatgccaaatta 148  Q
    |||||||| | ||| ||||| | ||||||||| | ||||| |||  |||| ||||||||||||| | |||||||| |||||||||||||    
T  25891076 gccaaattagatttagtaggtaggcgatcacggagcagtcgccatgcaaagattgacaccttta-gaggaacctgattatgccaaatta 25891163  T

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Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 47129583 - 47129774
Alignment:
Q  1 ccacctggccacagcctgaaacacactgacacgcctcggtatcaataacaccacgcaacgccaaatttgttttggtaggcaagcgatcacgaatcagtct 100  Q
    |||||||||  || ||||||||||||||||||||||| ||||| |||||||| ||| ||||||| |||| ||||||||||||||| ||||| | ||  ||    
T  47129583 ccacctggctgcaacctgaaacacactgacacgcctcagtatctataacaccccgcgacgccaagtttgatttggtaggcaagcggtcacggagcaacct 47129682  T
Q  101 ccaaacaaaaattgacacctttagggggaacctgtttatgccaaattaaatcgttgttctgcacaacttgaggattctcctgagttgtgagcata 195  Q
    |||| |||||||||  |||||||   | ||||||||||||||||||||||||  ||||||||| |||  | |||||||||||| |||||||||||    
T  47129683 ccaagcaaaaattg--accttta-aagaaacctgtttatgccaaattaaatcagtgttctgcaaaacccgtggattctcctgatttgtgagcata 47129774  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 40688256 - 40688341
Alignment:
Q  240 ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctcccaca 325  Q
    ||||||||| |||||| |||||||||||||||| ||||||| |    ||||||||||||||||||| | ||| |||||||||||||    
T  40688256 ccactgccacacatcataagaaagaggctgcaatgaaacattaacaagtaataacctacactccgcaagaagctcctcctcccaca 40688341  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 54684799 - 54684884
Alignment:
Q  240 ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctcccaca 325  Q
    ||||||||| |||||| |||||||||||||||| ||||||| ||   |||| |||||||||||| ||||||  ||||||| |||||    
T  54684799 ccactgccacacatcataagaaagaggctgcaaagaaacattagtaagtaacaacctacactcctctaaaatttcctccttccaca 54684884  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 19163128 - 19163045
Alignment:
Q  240 ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctccca 323  Q
    ||||||||| |||||| |||||||||| ||||| ||||||| ||   ||||||||||||||||||| | ||| | |||||||||    
T  19163128 ccactgccacacatcataagaaagaggttgcaaagaaacattagcaagtaataacctacactccgcaagaagcttctcctccca 19163045  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 43127541 - 43127478
Alignment:
Q  240 ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactcc 303  Q
    ||||| ||| |||||||||||||||  |||||| ||||||||||   |||||||||||||||||    
T  43127541 ccactaccacacatcaaaagaaagactctgcaaagaaacatcagcaagtaataacctacactcc 43127478  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 15602513 - 15602598
Alignment:
Q  240 ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctcccaca 325  Q
    ||||||||| |||||| |||||||||||||||| ||||||| ||   |||| |||||||||||| ||||||| |||||||||||||    
T  15602513 ccactgccacacatcataagaaagaggctgcaaagaaacattagtaagtaacaacctacactcctctaaaagctcctcctcccaca 15602598  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 325
Target Start/End: Original strand, 18588539 - 18588626
Alignment:
Q  238 aaccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctcccaca 325  Q
    ||||||| ||| |||||| |||||||||||||||| ||||||| |    |||| |||||||||||| |||||||||||||||||||||    
T  18588539 aaccactaccacacatcataagaaagaggctgcaaagaaacattaagaagtaacaacctacactcctctaaaagatcctcctcccaca 18588626  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 325
Target Start/End: Complemental strand, 7956621 - 7956534
Alignment:
Q  238 aaccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctcccaca 325  Q
    ||||||||||| |||||| ||||||||| |||||| ||||||| |    |||| |||||| ||||| |||||||||||||||||||||    
T  7956621 aaccactgccacacatcataagaaagagactgcaaagaaacattatgaagtaacaacctagactcctctaaaagatcctcctcccaca 7956534  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 7956729 - 7956690
Alignment:
Q  113 tgacacctttagggggaacctgtttatgccaaattaaatcg 153  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  7956729 tgacacctttagggg-aacctgtttatgccaaattaaatcg 7956690  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 29055565 - 29055622
Alignment:
Q  96 agtctccaaacaaaaattgacacctttagggggaacctgtttatgccaaattaaatcg 153  Q
    |||||||| ||||||||  | ||||| | ||||||||||||| |||||||||||||||    
T  29055565 agtctccacacaaaaataaagaccttcaaggggaacctgtttgtgccaaattaaatcg 29055622  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 324
Target Start/End: Original strand, 36255968 - 36256052
Alignment:
Q  240 ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctcccac 324  Q
    ||||||||| |||||| |||||||||||||||| ||||||| ||   ||||||||||||||||||| | ||| ||||||||||||    
T  36255968 ccactgccacacatcataagaaagaggctgcaaagaaacattagcaagtaataacctacactccgcaagaagctcctcctcccac 36256052  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17674040 - 17674088
Alignment:
Q  1 ccacctggccacagcctgaaacacactgacacgcctcggtatcaataac 49  Q
    ||||||||||||| || |||||||||||||||||||| || ||||||||    
T  17674040 ccacctggccacaaccagaaacacactgacacgcctctgtgtcaataac 17674088  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 240 - 325
Target Start/End: Complemental strand, 30712830 - 30712745
Alignment:
Q  240 ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctcccaca 325  Q
    ||||||||| |||||| |||||||||||||||  ||||||| ||   |||| |||||||||||| ||||||| |||||||||||||    
T  30712830 ccactgccacacatcataagaaagaggctgcagagaaacattagtaagtaacaacctacactcctctaaaagctcctcctcccaca 30712745  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 39477386 - 39477427
Alignment:
Q  288 taataacctacactccgctaaaagatcctcctcccacaacct 329  Q
    ||||||||||||||||||||| |  |||||||||||||||||    
T  39477386 taataacctacactccgctaacatctcctcctcccacaacct 39477427  T

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Target: scaffold0351 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 12943 - 12860
Alignment:
Q  240 ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctccca 323  Q
    ||||||||| |||||| |||||||||||||||| ||||||| ||   ||| || |||||||||||| ||||| |||||||||||    
T  12943 ccactgccacacatcataagaaagaggctgcaaagaaacattagcaagtactagcctacactccgccaaaagctcctcctccca 12860  T

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Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 87155 - 87110
Alignment:
Q  238 aaccactgccaaacatcaaaagaaagaggctgcaaggaaacatcag 283  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||    
T  87155 aaccactgccaaacatcataagaaagaggctgcaaagaaacatcag 87110  T

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Target: scaffold0750 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 6240 - 6325
Alignment:
Q  240 ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctcccaca 325  Q
    ||||||||| |||||| | |||||||||| ||| ||||||| ||   |||||||||||||||| ||||  || |||||||||||||    
T  6240 ccactgccacacatcataggaaagaggctacaaagaaacattagcaagtaataacctacactctgctaggagctcctcctcccaca 6325  T

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Target: scaffold0124 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 22602 - 22687
Alignment:
Q  240 ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctcccaca 325  Q
    ||||||||| |||||| | |||||||||| ||| ||||||| ||   |||||||||||||||| ||||  || |||||||||||||    
T  22602 ccactgccacacatcataggaaagaggctacaaagaaacattagcaagtaataacctacactctgctaggagctcctcctcccaca 22687  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 6986091 - 6986176
Alignment:
Q  240 ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctcccaca 325  Q
    ||||||||| |||||| | |||||||||||||| ||||| | ||   |||||||||||||||| ||||  || |||||||||||||    
T  6986091 ccactgccacacatcataggaaagaggctgcaaagaaacgttagcaagtaataacctacactctgctaggagctcctcctcccaca 6986176  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 325
Target Start/End: Original strand, 25783734 - 25783772
Alignment:
Q  287 gtaataacctacactccgctaaaagatcctcctcccaca 325  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  25783734 gtaacaacctacactccgctaaaagctcctcctcccaca 25783772  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 8130140 - 8130225
Alignment:
Q  240 ccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagactgtaataacctacactccgctaaaagatcctcctcccaca 325  Q
    ||||||||| |||||| | |||||||||||||| ||||  | ||   |||||||||||||||| ||||  || |||||||||||||    
T  8130140 ccactgccacacatcataggaaagaggctgcaaagaaatgttagcaagtaataacctacactctgctaggagctcctcctcccaca 8130225  T

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