View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_4 (Length: 658)
Name: NF9359_low_4
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-129; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 20089556 - 20089842
Alignment:
| Q |
1 |
ccactttgatcattatgctttactattgcatctacaagacgttttacaatgtcttcgttggcattactcactgctacatgtaatgctgttcctcttccct |
100 |
Q |
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| T |
20089556 |
ccactttgatcatcatgctttactattgcatctacaagacgttttacaatgtcttcgttggcattactcactgctacatgtaatgctgttcctcttccct |
20089655 |
T |
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| Q |
101 |
ttatttttatcttgtgaaaatatacatcttctttgtatttttctatcacttcttcccatttgtcttccattacaaactcgcggaacacgggagctacatt |
200 |
Q |
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| T |
20089656 |
ttattcttctcctgtgaaaaaatacatgttcttcgtatttttttataacttcttcccatttgtcttccattacaaactcgcggaacccggcagctacata |
20089755 |
T |
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| Q |
201 |
tttgttgtcacaaaataaaatagtaagacatacaataattaatgtcacattaacaaattggaggaaaaaatgtcagaaatattgaac |
287 |
Q |
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| T |
20089756 |
tttgttgtcacaaaataaaatagtaagacatacaataattaatgtcacattaaaaaattggaggaaaaaatgtcagaaatattgaac |
20089842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 20123412 - 20123623
Alignment:
| Q |
1 |
ccactttgatcattatgctttactattgcatctacaagacgttttacaatgtcttcgttggcattactcactgctacatgtaatgctgttcctcttccct |
100 |
Q |
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| T |
20123412 |
ccactttgatcatcatgctttactattgcatctacaagacgttttacactgtcttcgttggcattgcttactgccacatgtaatgctgttcctcttccct |
20123511 |
T |
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| Q |
101 |
ttatttttatcttgtgaaaatatacatcttctttgtatttttctatcacttcttcccatttgtcttccattacaaactcgcggaacacgggagctacatt |
200 |
Q |
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| T |
20123512 |
ttattcttatcttgtgaaaatatacatgttcttcgtatttatctatcacttctttccatttgtcttccattacaaactcgcggaacacggcagctacata |
20123611 |
T |
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| Q |
201 |
tttgttgtcaca |
212 |
Q |
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|||||||||||| |
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| T |
20123612 |
tttgttgtcaca |
20123623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 354 - 552
Target Start/End: Original strand, 20089955 - 20090160
Alignment:
| Q |
354 |
catcttgaggctgaatcatagagttaggatccatttctgaaggttgaaa------------aataagaagaataaggatcaataagagatgggtagtcta |
441 |
Q |
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| T |
20089955 |
catcttgaggctgaatcatagaattaggattcatttcggaaggttgaaacttaaaaatgaaaataagaagaataaggatcaatgagagatgggtagt--- |
20090051 |
T |
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| Q |
442 |
gtggtgctgtaaggaactgagcatatcaagtgcaaacctaattcctttatataaagaatgagaagctatgaatccgatacttcccgtaaagaaaattgat |
541 |
Q |
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| T |
20090052 |
--ggtgctgtaaggaactgagcatatcaagtgcaaacctaattcctttatataaagaatgagaagctatgaatccgatacttcctgtaaagaaaatggat |
20090149 |
T |
|
| Q |
542 |
accctgatcca |
552 |
Q |
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| T |
20090150 |
accctgatcca |
20090160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 19896406 - 19896235
Alignment:
| Q |
1 |
ccactttgatcattatgctt---tactattgcatctacaagacgttttacaatgtcttcgttggcattactcactgctacatgtaatgctgttcctcttc |
97 |
Q |
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| T |
19896406 |
ccactttgatcattatgcttctttactattacatctacaagacgttttacaatgtcttcgttgccattactcactgctacatgtaatgctgttcctcttc |
19896307 |
T |
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| Q |
98 |
cctttatttttatcttgtgaaaatatacatcttctttgtatttttctatcacttcttcccatttgtcttcca |
169 |
Q |
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| T |
19896306 |
cctttattcttatcttgtgaaaaaatacatgttcttcgtatttttttataacttcttcccatttctcttcca |
19896235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 294 - 499
Target Start/End: Original strand, 20124444 - 20124654
Alignment:
| Q |
294 |
ataaatataaggagagtttagatgtaccatcttgaaagtcataaggtacattttcatatccatcttgaggctgaatcatagagttaggatccatttctga |
393 |
Q |
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| T |
20124444 |
ataaatataaagagagtttggacgtaccatcttgaaaatcataaggtacatcttcgtcttcatcttgaggctgaatcatagagttatgattcatttcgta |
20124543 |
T |
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| Q |
394 |
aggttg----------aaaaataagaagaataaggatcaataagagatgggtagtctagtggtgctgtaaggaactgagcatatcaagtgcaaacctaat |
483 |
Q |
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| T |
20124544 |
agtttgcacttagaatgaaaataacaagaataagtatcaatgagagattgg-----tagtggtgctgtaagaaactgagcacatcaagtgcaaacctaat |
20124638 |
T |
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| Q |
484 |
tcctttatataaagaa |
499 |
Q |
| |
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||| |||||||||||| |
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| T |
20124639 |
tccgttatataaagaa |
20124654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 20123918 - 20123969
Alignment:
| Q |
211 |
caaaataaaatagtaagacatacaataattaatgtcacattaacaaattgga |
262 |
Q |
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| T |
20123918 |
caaaataaaatagtaagacatacaatatttaatgtcatataaaaaaattgga |
20123969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 20089913 - 20089949
Alignment:
| Q |
354 |
catcttgaggctgaatcatagagttaggatccatttc |
390 |
Q |
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|||||||||||||||||||||| ||||||| |||||| |
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| T |
20089913 |
catcttgaggctgaatcatagaattaggattcatttc |
20089949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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