View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_44 (Length: 325)
Name: NF9359_low_44
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 92 - 312
Target Start/End: Complemental strand, 27832877 - 27832657
Alignment:
| Q |
92 |
gaagaagcctcggattcaagaattattgtatcgatcaaagaataatctctcagatggtacggacaatattcatacatcacaggcaaataattaataatga |
191 |
Q |
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| T |
27832877 |
gaagaagcctcagattcaagaattattgtatcgatcaaagaataatctctcagatggtacggacaatattcatacatcacaggcaaataattaataatga |
27832778 |
T |
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| Q |
192 |
tatgataaaaatataggtcgttaccaggccctcaaatcaagtcaaagatcaaagagagcagacatgcggaccttaagaaattcaattttcgtgcacacag |
291 |
Q |
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| T |
27832777 |
tatgataaaaatataggtcgttaccaggccctcaaatcaagtcaaagatcaaagagagcagacatgcggaccttaagaaattcaattttcgtgcacacag |
27832678 |
T |
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| Q |
292 |
caatgcttccttcattgtttt |
312 |
Q |
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||||||||||||||||||||| |
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| T |
27832677 |
caatgcttccttcattgtttt |
27832657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 198 - 307
Target Start/End: Complemental strand, 27827839 - 27827733
Alignment:
| Q |
198 |
aaaaatataggtcgttaccaggccctcaaatcaagtcaaagatcaaagagagcagacatgcggaccttaagaaattcaattttcgtgcacacagcaatgc |
297 |
Q |
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| T |
27827839 |
aaaaatgtaggtcgttaccaggccctaaaatcaaatcaaagatcatagagggcagacatgcggacct---aaaatttaattttcgtgcacacagcaatga |
27827743 |
T |
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| Q |
298 |
ttccttcatt |
307 |
Q |
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| T |
27827742 |
ttccttcatt |
27827733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 27832926 - 27832883
Alignment:
| Q |
23 |
cagagactctaaattgttgcctattctctcaatcaaaacagaaa |
66 |
Q |
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| T |
27832926 |
cagagactctaaattgttgcctattatttcaatcaaaacagaaa |
27832883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 27845306 - 27845270
Alignment:
| Q |
276 |
attttcgtgcacacagcaatgcttccttcattgtttt |
312 |
Q |
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| T |
27845306 |
attttcgtgcacacaacaatgcttccttcattgtttt |
27845270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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