View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_46 (Length: 311)
Name: NF9359_low_46
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 100 - 302
Target Start/End: Original strand, 35406960 - 35407162
Alignment:
| Q |
100 |
aaggagtgagtcttgatagtgaaactcttttaaatacatgcaagttttagatttaagaaattctctgtttgagactctacttaattgatcaattgctaaa |
199 |
Q |
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| T |
35406960 |
aaggagtgagtcttgatagtgaaacttttttaaatacatgcaagttttagatttaagaaattctatgtttgagactctacttaattgatcaattgctaaa |
35407059 |
T |
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| Q |
200 |
ttagaatacttatgtgcaagnnnnnnnactcaatggatgcatggattggatattgaaacactgcctaaatggttaggcaagctgatcagccttcgagaat |
299 |
Q |
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| T |
35407060 |
ttagaatacttatgtggaagtttgtttactcaatggatgcatggattggatattgaaacactgcctaaatggttaggcaagctgatcagcctttgagaat |
35407159 |
T |
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| Q |
300 |
tat |
302 |
Q |
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| T |
35407160 |
tat |
35407162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 35406829 - 35406935
Alignment:
| Q |
1 |
tgtagcagttaaatcccattttcctagattacctgagcaagtaaagcatttatcaattgttgaaaatgtttcaatttgccattctttgttccccaagtca |
100 |
Q |
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| T |
35406829 |
tgtagcagttaaatcccattttcttagattacctgagcaagtaaagcatttatcaattgttgaaaatgtttcaatttcccattctttgttccccaagtca |
35406928 |
T |
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| Q |
101 |
aggagtg |
107 |
Q |
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| T |
35406929 |
aggagtg |
35406935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 18117301 - 18117202
Alignment:
| Q |
8 |
gttaaatcccattttcctagattacctgagcaagtaaagcatttatcaattgttgaaaatgtttcaatttgccattctttgttccccaagtcaaggagtg |
107 |
Q |
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| T |
18117301 |
gttaaatcccacattcttagattacctgagcgagtaaagcatttatcaattgttgaaaatgtttcaatttgcgattctttgttccccaagtcaaggagtg |
18117202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 18132985 - 18132940
Alignment:
| Q |
252 |
ttgaaacactgcctaaatggttaggcaagctgatcagccttcgaga |
297 |
Q |
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| T |
18132985 |
ttgaaacactgcctaaagggttaggcaagctgatcagccttcgaga |
18132940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 18124932 - 18124860
Alignment:
| Q |
30 |
tacctgagcaagtaaagcatttatcaattgttgaaaatgtttcaatttgccattctttgttccccaagtcaag |
102 |
Q |
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| T |
18124932 |
tacctgagcaagtgcgacatttatcaattgttgaaaatgattcacttggccatactttattccccaagtcaag |
18124860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 18116943 - 18116902
Alignment:
| Q |
252 |
ttgaaacactgcctaaatggttaggcaagctgatcagccttc |
293 |
Q |
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| T |
18116943 |
ttgaaacattgcctaaagggttaggcaagctgatcagccttc |
18116902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 18117124 - 18117053
Alignment:
| Q |
131 |
aaatacatgcaagttttagatttaagaaattctctgtttgagactctacttaattgatcaattgctaaattagaa |
205 |
Q |
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| T |
18117124 |
aaatacttgcgagttttagatttaagaaattcttcgatcgagactctacctaat---tcaattgctacattagaa |
18117053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 36223683 - 36223736
Alignment:
| Q |
46 |
gcatttatcaattgttgaaaatgtttcaatttgccattctttgttccccaagtc |
99 |
Q |
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|||| |||||||||||||||||| |||| || ||||| ||||||||||||||| |
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| T |
36223683 |
gcatatatcaattgttgaaaatggttcacttggccatgatttgttccccaagtc |
36223736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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