View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_48 (Length: 304)
Name: NF9359_low_48
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 42302370 - 42302083
Alignment:
| Q |
1 |
agctagtgaggatcatagtaatttagatcaaagtctttgagtctaatcttcactacaatcagggaagcttgtcctgtaaagcaaacaatactaaatcaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42302370 |
agctagtgaggatcatagtaatttagatcaaagtctttgagtctaatcttcactacaatcagggaagcttgtcctgtaaagcaaacaatactagatcaaa |
42302271 |
T |
|
| Q |
101 |
tagtgaaatgaatgtctatgtactagttgatctaattgttgtatttgtactggtttatctaaaattgtttgctttagagacagtgcttcattgtccttat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42302270 |
tagtgaaatgaatgtctatgtactagttgatctaattgttgtatttgtactggttgatctaaaattgtttgctttagagacggtgcttcattgtccttat |
42302171 |
T |
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| Q |
201 |
agtcaaagattagactttgaaatactttgatcaaaattgaatataaggatatttttcaacatattttaatgagtccgacatgtgttatt |
289 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42302170 |
agtc-aagattagactttgaaatactttgatcaaaattgaatataaggatatttttcaacatattttaatgagtccgacatgtgttatt |
42302083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 42301667 - 42301718
Alignment:
| Q |
238 |
tgaatataaggatatttttcaacatattttaatgagtccgacatgtgttatt |
289 |
Q |
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| T |
42301667 |
tgaatataaggatatttttcaagataatttaataagtttgacatgtgttatt |
42301718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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