View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_49 (Length: 299)
Name: NF9359_low_49
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 39167394 - 39167103
Alignment:
| Q |
1 |
gtacacagaatatggaagaaaaagatttattgttgaccaaatttttgtatggcctccatcaattgtttatgtatctggtttatttgagtacagaaggaca |
100 |
Q |
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| T |
39167394 |
gtacacagaatatggaagaaaaagatttattgttgaccaaatttttgtatggcctccatcaattgtttatgtatctggtttatttgagtacagaaggaca |
39167295 |
T |
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| Q |
101 |
gcgtgaggaatcaaagagagcatttgattctgcttcttgctaactcgcatataaggctacaccctaaacccgagccttttaacaaggcatgtatctgttt |
200 |
Q |
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| T |
39167294 |
gcgtgaggaatcaaagagagcatttgattctgcttcttgctaactcgcatataaggctacaccctaaacccgagccttttaacaaggcatgtatctgttt |
39167195 |
T |
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| Q |
201 |
catactttctctgtttcaggcaaaataaaagccaaaactgtaatcaaaagaacactagtcggtaattgaattcacatgttttttctctgctt |
292 |
Q |
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| T |
39167194 |
catactttctctgtttcaggcaaaataaaagccaaaactgtaatcaaaagaacactagtcggtaattgaattcacatgttttttctctgctt |
39167103 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 43964785 - 43964704
Alignment:
| Q |
106 |
aggaatcaaagagagcatttgattctgcttcttgctaactcgcatataaggctacaccctaaacccgagccttttaacaagg |
187 |
Q |
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|||||||| ||||||||| | ||| |||||||||||||| ||||||||||||||||| |||||||||||| | ||||||| |
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| T |
43964785 |
aggaatcagagagagcatctaattttgcttcttgctaacaaccatataaggctacaccccaaacccgagcctctcaacaagg |
43964704 |
T |
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