View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_52 (Length: 279)
Name: NF9359_low_52
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 3 - 256
Target Start/End: Original strand, 13484218 - 13484471
Alignment:
| Q |
3 |
caaagcagtgagtgagtgagtgttgattttgttgcttgtttgtcgtctttattcttccctttcattgttagctcgaaagaacttagaccccacaaatgtg |
102 |
Q |
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| T |
13484218 |
caaagcagtgagtgagtgagtgttgattttgttgcttgtttgtcgtctttattcttccctttcattgttagctcgaaagaacttagaccccacaaatgtg |
13484317 |
T |
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| Q |
103 |
ttaaaagatttgcattattttatgctactacctctttactccttcattcctcacgtatatctatacacatatactttcatgcaatcttattcttcccttt |
202 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13484318 |
ttaaaagatttgcattattttatgctactatctctttactccttcattcctcacgtatatctatacacatatactttcatgcaatcttattcttcccttt |
13484417 |
T |
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| Q |
203 |
gtgtaaaacgtatttactcaaatttacccatattataaatgaatatctaccaac |
256 |
Q |
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| T |
13484418 |
gtgtaaaacgtatttactcaaatttacccatattataaatgaatatctaccaac |
13484471 |
T |
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