View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9359_low_54 (Length: 277)

Name: NF9359_low_54
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9359_low_54
NF9359_low_54
[»] chr1 (3 HSPs)
chr1 (16-269)||(43104556-43104829)
chr1 (209-261)||(30790249-30790301)
chr1 (210-261)||(14183455-14183506)
[»] chr4 (8 HSPs)
chr4 (201-261)||(8756094-8756154)
chr4 (208-256)||(5664676-5664724)
chr4 (209-261)||(19323126-19323178)
chr4 (210-261)||(36378726-36378777)
chr4 (210-269)||(31983383-31983444)
chr4 (210-256)||(36380788-36380834)
chr4 (196-261)||(12102515-12102580)
chr4 (213-253)||(54928548-54928588)
[»] chr8 (1 HSPs)
chr8 (210-261)||(3005486-3005537)
[»] chr7 (1 HSPs)
chr7 (210-261)||(24813348-24813399)
[»] chr6 (1 HSPs)
chr6 (210-269)||(25465444-25465503)
[»] chr3 (1 HSPs)
chr3 (210-269)||(53597585-53597644)
[»] chr2 (4 HSPs)
chr2 (210-269)||(13828177-13828236)
chr2 (210-269)||(17897099-17897158)
chr2 (211-269)||(40699719-40699777)
chr2 (211-261)||(41302887-41302937)
[»] chr5 (1 HSPs)
chr5 (211-261)||(6661038-6661088)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 43104829 - 43104556
Alignment:
Q  16 aataacaatctttttaccttggaaattctactttttggcaatcgtannnnnnnnncttcctatgaaagnnnnnnnnnn-gaagaggtttcttcct--gaa 112  Q
    |||||||||||||||| |||||||||||||||||||||||||||||         |||||||||||||           ||||||||||||||||  |||    
T  43104829 aataacaatctttttatcttggaaattctactttttggcaatcgtatttttttttcttcctatgaaagtttttttttttgaagaggtttcttcctatgaa 43104730  T
Q  113 agttgtattgaaagaatcctaccaagtctacaataaaaatgggcagcgtgccaaatgccaatgctccatggc-----------------cattcctctct 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||    
T  43104729 agttgtattgaaagaatcctaccaagtctacaataaaaatgggcagcgtgccaaatgccaatgctccatggcaagccatgctccatggccattcctctct 43104630  T
Q  196 tgagattttattagtgttgtgaattcgatgaaaattacatcaataaaatatttgatatgtgaagcagaataatc 269  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||    
T  43104629 tgagattttattagtgttgtgaatttgatgaaaattacaccaataaaatatttgatatgtgaagcaaaataatc 43104556  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 30790249 - 30790301
Alignment:
Q  209 gtgttgtgaattcgatgaaaattacatcaataaaatatttgatatgtgaagca 261  Q
    |||||||||||||||||||||| ||| ||||||||||  |||| |||||||||    
T  30790249 gtgttgtgaattcgatgaaaatcacaccaataaaatacctgatgtgtgaagca 30790301  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 14183455 - 14183506
Alignment:
Q  210 tgttgtgaattcgatgaaaattacatcaataaaatatttgatatgtgaagca 261  Q
    ||||||||||||||| ||||| ||| |||||||||| ||||| |||||||||    
T  14183455 tgttgtgaattcgataaaaatcacaccaataaaatacttgatgtgtgaagca 14183506  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 8756094 - 8756154
Alignment:
Q  201 ttttattagtgttgtgaattcgatgaaaattacatcaataaaatatttgatatgtgaagca 261  Q
    ||||| || ||||||||||||||||||||| |||||||||||||| ||||| |||| ||||    
T  8756094 ttttaatattgttgtgaattcgatgaaaatcacatcaataaaatacttgatgtgtggagca 8756154  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 5664724 - 5664676
Alignment:
Q  208 agtgttgtgaattcgatgaaaattacatcaataaaatatttgatatgtg 256  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||| ||||    
T  5664724 agtgttgtgaattcgatgaaaatcacaccaataaaatacttgatgtgtg 5664676  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 19323178 - 19323126
Alignment:
Q  209 gtgttgtgaattcgatgaaaattacatcaataaaatatttgatatgtgaagca 261  Q
    |||||||||||||||||||||| ||| |||||||||| ||||| |||| ||||    
T  19323178 gtgttgtgaattcgatgaaaatcacaccaataaaatacttgatgtgtggagca 19323126  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 36378777 - 36378726
Alignment:
Q  210 tgttgtgaattcgatgaaaattacatcaataaaatatttgatatgtgaagca 261  Q
    ||||| ||||||||||||||| ||| |||||||||| |||||||||| ||||    
T  36378777 tgttgcgaattcgatgaaaatcacaccaataaaatacttgatatgtggagca 36378726  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 31983383 - 31983444
Alignment:
Q  210 tgttgtgaattcgatgaaaa--ttacatcaataaaatatttgatatgtgaagcagaataatc 269  Q
    |||||| |||||||||||||  | |||||||||||||||||||| |||| |||| |||||||    
T  31983383 tgttgtaaattcgatgaaaaaatcacatcaataaaatatttgatgtgtggagcaaaataatc 31983444  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 36380834 - 36380788
Alignment:
Q  210 tgttgtgaattcgatgaaaattacatcaataaaatatttgatatgtg 256  Q
    |||||| |||||||||||||| ||| |||||||||||||||| ||||    
T  36380834 tgttgtcaattcgatgaaaatcacaccaataaaatatttgatgtgtg 36380788  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 12102580 - 12102515
Alignment:
Q  196 tgagattttattagtgttgtgaattcgatgaaaattacatcaataaaatatttgatatgtgaagca 261  Q
    |||||| | ||| |||||||||||||||||||||| ||| ||||||| || ||||| |||| ||||    
T  12102580 tgagatgtaattggtgttgtgaattcgatgaaaatcacaccaataaactacttgatgtgtggagca 12102515  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 54928548 - 54928588
Alignment:
Q  213 tgtgaattcgatgaaaattacatcaataaaatatttgatat 253  Q
    |||||||||||| ||||| |||| |||||||||||||||||    
T  54928548 tgtgaattcgataaaaatcacattaataaaatatttgatat 54928588  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 3005486 - 3005537
Alignment:
Q  210 tgttgtgaattcgatgaaaattacatcaataaaatatttgatatgtgaagca 261  Q
    ||||||||||||||||||||| ||| |||||||||| ||||| |||| ||||    
T  3005486 tgttgtgaattcgatgaaaatcacaccaataaaatacttgatgtgtggagca 3005537  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 24813348 - 24813399
Alignment:
Q  210 tgttgtgaattcgatgaaaattacatcaataaaatatttgatatgtgaagca 261  Q
    |||||||| |||||||||||| |||||||||||||| ||||| |||| ||||    
T  24813348 tgttgtgagttcgatgaaaatcacatcaataaaatacttgatgtgtggagca 24813399  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 25465444 - 25465503
Alignment:
Q  210 tgttgtgaattcgatgaaaattacatcaataaaatatttgatatgtgaagcagaataatc 269  Q
    ||||||||||||||||||||| ||| |||||||||| ||||| | || |||| |||||||    
T  25465444 tgttgtgaattcgatgaaaatcacaccaataaaatacttgatgtatggagcaaaataatc 25465503  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 53597644 - 53597585
Alignment:
Q  210 tgttgtgaattcgatgaaaattacatcaataaaatatttgatatgtgaagcagaataatc 269  Q
    ||||||||||||||||||||| ||| |||||||||| || || |||| |||| |||||||    
T  53597644 tgttgtgaattcgatgaaaatcacaccaataaaatactttatgtgtggagcaaaataatc 53597585  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 13828177 - 13828236
Alignment:
Q  210 tgttgtgaattcgatgaaaattacatcaataaaatatttgatatgtgaagcagaataatc 269  Q
    ||||||||||||| | ||||| ||| |||||||||||||||| |||| |||| |||||||    
T  13828177 tgttgtgaattcgttaaaaatcacaccaataaaatatttgatgtgtggagcaaaataatc 13828236  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 17897099 - 17897158
Alignment:
Q  210 tgttgtgaattcgatgaaaattacatcaataaaatatttgatatgtgaagcagaataatc 269  Q
    ||||||||||||| | |||| ||||||||||||||| ||||| |||| |||| |||||||    
T  17897099 tgttgtgaattcgttaaaaaatacatcaataaaatacttgatgtgtggagcaaaataatc 17897158  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 40699777 - 40699719
Alignment:
Q  211 gttgtgaattcgatgaaaattacatcaataaaatatttgatatgtgaagcagaataatc 269  Q
    ||||||||||||||| |||| ||||||||||| || ||||| |||| |||| |||||||    
T  40699777 gttgtgaattcgatggaaatcacatcaataaattacttgatgtgtggagcaaaataatc 40699719  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 41302887 - 41302937
Alignment:
Q  211 gttgtgaattcgatgaaaattacatcaataaaatatttgatatgtgaagca 261  Q
    |||||||||||| | ||||||||| |||||||||| || ||||||||||||    
T  41302887 gttgtgaattcgttaaaaattacaccaataaaatactttatatgtgaagca 41302937  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 6661038 - 6661088
Alignment:
Q  211 gttgtgaattcgatgaaaattacatcaataaaatatttgatatgtgaagca 261  Q
    |||||||||||||||||||| ||| |||| ||||||||||| |||| ||||    
T  6661038 gttgtgaattcgatgaaaatcacaccaattaaatatttgatgtgtggagca 6661088  T

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