View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_57 (Length: 253)
Name: NF9359_low_57
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_57 |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 53 - 253
Target Start/End: Original strand, 36658025 - 36658225
Alignment:
| Q |
53 |
aatacataagaacttcattatagaaatttgcggtaaccaaaataattactaaataataatatacatatgctatttagaggtatatatcgtcactacattt |
152 |
Q |
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| T |
36658025 |
aatacataagaacttcattatagaaatttgcggtaaccaaaataattactaaataataatatacatatgctatttagaggtatatatcgtcactacattt |
36658124 |
T |
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| Q |
153 |
taggtctatnnnnnnnggaacctttgccttgtaattgtttacatgctggagagcatgcatcttggcaaagtgaatcttctgcaaatttgattttcaagca |
252 |
Q |
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| T |
36658125 |
taggtctataaaataaagaacctttgccttgtaattgtttacatgctggagagcatgcatcttggcaaagtgaatcttctgcaaatttgattttcaagca |
36658224 |
T |
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| Q |
253 |
t |
253 |
Q |
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| T |
36658225 |
t |
36658225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 36657980 - 36658011
Alignment:
| Q |
10 |
tttggtgttgagaaatcacagtattgcggatg |
41 |
Q |
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| T |
36657980 |
tttggtgttgagaaatcacagtattgcggatg |
36658011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 13032290 - 13032372
Alignment:
| Q |
171 |
aacctttgccttgtaattgtttacatgctggagagcatgcatcttggcaaagtgaatcttctgcaaatttgattttcaagcat |
253 |
Q |
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| T |
13032290 |
aacctttgcctttcaattgtttacatgctggagagcaagcttcttgacaaagtgaaacttgtgcaagtttgattttcaagcat |
13032372 |
T |
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