View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_6 (Length: 612)
Name: NF9359_low_6
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-175; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 173 - 596
Target Start/End: Complemental strand, 52140714 - 52140300
Alignment:
| Q |
173 |
actagcctctctgttaatgcattatctttcaatatggcttcttcttcatcttcttcaaccaaagtgacccttaagcttctgtttgacaaaaagcaaaaca |
272 |
Q |
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| T |
52140714 |
actagcctctctgttaatgcattatctttcaatatggcttcttcttca---------accaaagtaacccttaagcttctggttgacaaaaagcaaaaca |
52140624 |
T |
|
| Q |
273 |
aagttctattcgctgaagcatccaaagccgccatagactctctcttaaacatgtttcgtttgtcttttggtactgttgtaaggctcatgagaaacaacga |
372 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
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| T |
52140623 |
aagttctattcgctgaagcatccaaagctgccataaactctctcttaaacatgtttcgcttgtcttttggtactgttgtaaggctcatgagcaacaatga |
52140524 |
T |
|
| Q |
373 |
caagcatttgtttggcagcttaggaaatctatatcatactagtactactctccaaaacctcaaccagaattatgttctctttgatccaacgattccaaat |
472 |
Q |
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| T |
52140523 |
catgcatttgtttggcagcttaggaaatctatatcatactagtactactgtccaaaatctcaaccagaattatgttctctttgatccaacaattccaaat |
52140424 |
T |
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| Q |
473 |
gatgatcacaatctaggaacctcgctttacatgtgtccaaatggatgcacttatggtattacatcgtgtgatcaatgctcacgacctatgaaccgtgacc |
572 |
Q |
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| T |
52140423 |
gatgatcacagtctaggaatctcggtttacatgtgtccaaatggatgcacttatggtattacatcgtgtgatcaatgctcgcaacctatgaaccgggacg |
52140324 |
T |
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| Q |
573 |
aaacatgtcgtgttgctatgaaag |
596 |
Q |
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| T |
52140323 |
aaacacgtcatgttgctatgaaag |
52140300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 39 - 176
Target Start/End: Complemental strand, 52140883 - 52140746
Alignment:
| Q |
39 |
gtggcaactgtttgtacataaatacatcgaattaaattagcaataccgtggccactggtacttcatacattccaatttccaatctctaagtaataaatac |
138 |
Q |
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| T |
52140883 |
gtggcaactgtttgtacataaatacatcgaattaaattagcaataccgtggccactggtacttcatacattccaatttccaatctctaagtaataaatac |
52140784 |
T |
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| Q |
139 |
caaacttacttttacaattttctatacatcttccacta |
176 |
Q |
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| T |
52140783 |
caagcttacttttacaattttctatacatcttccacta |
52140746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 221 - 452
Target Start/End: Complemental strand, 52131077 - 52130840
Alignment:
| Q |
221 |
tcttcttcaaccaaagtgacccttaagcttctgtttgacaaaaagcaaaacaaagttctattcgctgaagcatccaaagccgccatagactctctcttaa |
320 |
Q |
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| T |
52131077 |
tcttcttccaccaaaatgacccttaagcttccggttgacacaaagcaaaacaaagttctgtttgcagaagcatcaaaagctgccgtagactctctcttaa |
52130978 |
T |
|
| Q |
321 |
acatgtttcgtttgtcttttggtactgttgtaaggctcat---gagaaacaacg---acaagcatttgtttggcagcttaggaaatctatatcatactag |
414 |
Q |
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| T |
52130977 |
acatgtttcacttgtcttttggcacagttttaaggctcataagtagcaataacgttaacatgcatttggcgggtagcttaggcaatctgcatcacactag |
52130878 |
T |
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| Q |
415 |
tactactctccaaaacctcaaccagaattatgttctct |
452 |
Q |
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| T |
52130877 |
tagtactctccaaaacctcaaccagaattatgttctct |
52130840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 52131281 - 52131249
Alignment:
| Q |
106 |
cattccaatttccaatctctaagtaataaatac |
138 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
52131281 |
cattccaatttccaatctcttagtaataaatac |
52131249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 173 - 561
Target Start/End: Original strand, 17525002 - 17525380
Alignment:
| Q |
173 |
actagcctctctgttaatgcattatctttcaatatggcttcttcttcatcttcttcaaccaaagtgacccttaagcttctgtttgacaaaaagcaaaaca |
272 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||||| |
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| T |
17525002 |
actagcctctctgttaatgcattatctttcaatatggcttctt---------cttcaaccaaagtgacccttaggcttctggttgacacaaagcaaaaca |
17525092 |
T |
|
| Q |
273 |
aagttctattcgctgaagcatccaaagccgccatagactctctcttaaacatgtttcgtttgtcttttggtactgttgtaaggctcatgagaaacaacga |
372 |
Q |
| |
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||||| | || || ||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17525093 |
aagttatgtttgccgaatcatcacaagctgccatagactctctcttaaacatgtttcgtttgtcttttggtactgttgtaaggctcatgagctacaacga |
17525192 |
T |
|
| Q |
373 |
caagcatttgtttggcagcttaggaaatctatatcatactagtactactctccaaaacctcaaccagaattatgttctctttgatccaacgattccaaat |
472 |
Q |
| |
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|| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||||| |||||||| |||||||| ||||||||| |
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| T |
17525193 |
catgcatttgtttggcagcttaggaaatctgtatcatactagtactactgtccaaaatctcaaccaaaattacgttctcttcgatccaacaattccaaat |
17525292 |
T |
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| Q |
473 |
gatgatcacaatctaggaacctcgctttacatgtgtccaaatggatgcacttatggtattacatcgtgtgatcaatgctcacgacctat |
561 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | |||||| |
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| T |
17525293 |
gatgatcacagcctaggaacctcgttttacatgtgtccaaatggatgcacttaaggtattacatcgtg-gatcaatgctcgcaacctat |
17525380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 17524854 - 17524955
Alignment:
| Q |
62 |
acatcgaattaaattagcaataccgtggccactggtacttcatacattccaatttccaatctctaagtaataaataccaaacttacttttacaattttct |
161 |
Q |
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||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
17524854 |
acatcgaattaaattagcaataccgtggccagtaggacttcatacattccaatttccaatctctaagtaataaatacc-aagttacttttacaattttct |
17524952 |
T |
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| Q |
162 |
ata |
164 |
Q |
| |
|
||| |
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|
| T |
17524953 |
ata |
17524955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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