View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_62 (Length: 250)
Name: NF9359_low_62
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 43143620 - 43143865
Alignment:
| Q |
1 |
ttcgatgggctttgacactagtggaagaacattctttctgtggggaggctgtatgatggcaagcaccttttgccttttcttagttgtcactttaaagaaa |
100 |
Q |
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| T |
43143620 |
ttcgatgggctttgacactagtggaagaacattctttctgtggggaggctgtatgatggcaagcaccttttgccttttcttagttgtcactttaaagaaa |
43143719 |
T |
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| Q |
101 |
aacttaattttaacatgttagtttttctccagatgcatgccgatgactttaggcaagatcgttatggtgtagtctcgggacttaaagatggtggatattc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43143720 |
aacttaattttaacatgttagtttttctccagatgcatgccgatgactttaggcaagatcgttatggtgtagtctcgggacttaaagatggtggatattt |
43143819 |
T |
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| Q |
201 |
tgatgatatgactcttgcagccatagctggtacatctctgcttctc |
246 |
Q |
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| T |
43143820 |
tgatgatatgactcttgcagccatagctggtacatctttggttctc |
43143865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 43155726 - 43155962
Alignment:
| Q |
1 |
ttcgatgggctttgacactagtggaagaacattctttctgtggggaggctgtatgatggcaagcaccttttgccttttcttagttgtcactttaaagaaa |
100 |
Q |
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|||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |
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| T |
43155726 |
ttcgatgggctttgccactggtggaagaacattctttctttggggaggctgtatgatggcaagtagcttttgccttttcttagttgtcgctttaaagaaa |
43155825 |
T |
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| Q |
101 |
aacttaattttaacatgttagtttttctccagatgcatgccgatgactttaggcaagatcgttatggtgtagtctcgggacttaaagatggtggatattc |
200 |
Q |
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| T |
43155826 |
aacttaattttaacatgttagtttttctccagatgcatgccgatgactttaggcaagatcgttatggtgtagtctcgggacttaaagatggtggatattc |
43155925 |
T |
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| Q |
201 |
tgatgatatgactcttgcagccatagctggtacatct |
237 |
Q |
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| T |
43155926 |
tgatgatatgactcttgcagccatagctggtacatct |
43155962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 33833754 - 33833645
Alignment:
| Q |
122 |
tttttctccagatgcatgccgatgactttaggcaagatcgttatggtgtagtctcgggacttaaagatggtggatattctgatgatatgactcttgcagc |
221 |
Q |
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||||||| |||||||||| || ||||||||||||||| || |||||||||||| | |||| || |||||||||||||||||||||||||||||||||| |
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| T |
33833754 |
tttttctaaagatgcatgctgaagactttaggcaagataattgtggtgtagtctcagaacttcaaaatggtggatattctgatgatatgactcttgcagc |
33833655 |
T |
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| Q |
222 |
catagctggt |
231 |
Q |
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|||||||||| |
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| T |
33833654 |
catagctggt |
33833645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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